RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 TMBIM4Q9HC24 238 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 SLC52A3Q9NQ40 469 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 ATAD3AQ9NVI7 634 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 THAP1Q9NVV9 213 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 NKIRAS1Q9NYS0 192 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 ARFGEF3Q5TH69 2177 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 IGKV3D-15A0A087WSY6 115 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 SKAP2O75563 359 aaPredicted RBP9.61□□□□□ -0.87
VPS53-207ENST00000570510 CYP7B1O75881 506 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 ADRA2AP08913 450 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 NPR2P20594 1047 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 PRPS1L1P21108 318 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 RPL14P50914 215 aaKnown RBP9.61□□□□□ -0.87
VPS53-207ENST00000570510 FOXG1P55316 489 aaPredicted RBP9.61□□□□□ -0.87
VPS53-207ENST00000570510 POU6F2P78424 691 aaPredicted RBP9.61□□□□□ -0.87
VPS53-207ENST00000570510 EMX2Q04743 252 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 STX3Q13277 289 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 QPRTQ15274 297 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 TIGD2Q4W5G0 525 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 CCNJQ5T5M9 372 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 HHATQ5VTY9 493 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 CLEC6AQ6EIG7 209 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 HDXQ7Z353 690 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 ZAR1Q86SH2 424 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 SLC16A11Q8NCK7 471 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 OR4F15Q8NGB8 312 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 CLDND2Q8NHS1 167 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 MECRQ9BV79 373 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 KATNB1Q9BVA0 655 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 TUBB1Q9H4B7 451 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 REEP4Q9H6H4 257 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 KCNK9Q9NPC2 374 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 GIN1Q9NXP7 522 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 TREM2Q9NZC2 230 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 ATP6V1HQ9UI12 483 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 ICAM5Q9UMF0 924 aa9.61□□□□□ -0.87
VPS53-207ENST00000570510 SPIN1Q9Y657 262 aaPredicted RBP9.61□□□□□ -0.87
VPS53-207ENST00000570510 IGHV1-18A0A0C4DH31 117 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 A0A0G2JMP0 313 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 A0A0X1KG70 313 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 TMEM120BA0PK00 339 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 POM121CA8CG34 1229 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 CHRNGP07510 517 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 GAAP10253 952 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 PAX7P23759 505 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 MPGP29372 298 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 HPCAL1P37235 193 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 SLC1A6P48664 564 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 IL13RA1P78552 427 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 SLC25A3Q00325 362 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 MYBPC1Q00872 1141 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 LRRC74AQ0VAA2 488 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 MERTKQ12866 999 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 CHI3L2Q15782 390 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 DUSP5Q16690 384 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 DPY19L1Q2PZI1 675 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 RFTN2Q52LD8 501 aaPredicted RBP9.6□□□□□ -0.87
VPS53-207ENST00000570510 HIKESHIQ53FT3 197 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 SYT14P1Q58G82 188 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 C6orf136Q5SQH8 315 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 ABLIM2Q6H8Q1 611 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 OGFOD2Q6N063 350 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 ZNF551Q7Z340 670 aaPredicted RBP9.6□□□□□ -0.87
VPS53-207ENST00000570510 ABHD12BQ7Z5M8 362 aaPredicted RBP9.6□□□□□ -0.87
VPS53-207ENST00000570510 TREML1Q86YW5 311 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 DDIASQ8IXT1 998 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 ZDHHC22Q8N966 263 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 OR4M2Q8NGB6 313 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 OR5W2Q8NH69 310 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 PSMA8Q8TAA3 256 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 SLC25A43Q8WUT9 341 aaPredicted RBP9.6□□□□□ -0.87
VPS53-207ENST00000570510 CKAP2Q8WWK9 683 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 TMEM234Q8WY98 164 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 C22orf15Q8WYQ4 148 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 HOXB13Q92826 284 aaPredicted RBP9.6□□□□□ -0.87
VPS53-207ENST00000570510 OTUB1Q96FW1 271 aaPredicted RBP9.6□□□□□ -0.87
VPS53-207ENST00000570510 MS4A4EQ96PG1 132 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 PKP2Q99959 881 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 BTBD2Q9BX70 525 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 QRSL1Q9H0R6 528 aaKnown RBP9.6□□□□□ -0.87
VPS53-207ENST00000570510 CENPHQ9H3R5 247 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 TPK1Q9H3S4 243 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 TNFRSF12AQ9NP84 129 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 OBP2BQ9NPH6 170 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 NOP53Q9NZM5 478 aaKnown RBP9.6□□□□□ -0.87
VPS53-207ENST00000570510 ZDHHC2Q9UIJ5 367 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 CORINQ9Y5Q5 1042 aa9.6□□□□□ -0.87
VPS53-207ENST00000570510 TRPC5OSA6NMA1 111 aa9.59□□□□□ -0.87
VPS53-207ENST00000570510 HMGB1P1B2RPK0 211 aaPredicted RBP9.59□□□□□ -0.87
VPS53-207ENST00000570510 PIP5K1BO14986 540 aa9.59□□□□□ -0.87
VPS53-207ENST00000570510 PDPK1O15530 556 aa9.59□□□□□ -0.87
VPS53-207ENST00000570510 PPIHO43447 177 aaKnown RBP9.59□□□□□ -0.87
VPS53-207ENST00000570510 H6PDO95479 791 aa9.59□□□□□ -0.87
VPS53-207ENST00000570510 LINC00032P0C843 101 aa9.59□□□□□ -0.87
VPS53-207ENST00000570510 ACP2P11117 423 aa9.59□□□□□ -0.87
VPS53-207ENST00000570510 BCKDHAP12694 445 aa9.59□□□□□ -0.87
VPS53-207ENST00000570510 SDC1P18827 310 aa9.59□□□□□ -0.87
VPS53-207ENST00000570510 MAGOHP61326 146 aaKnown RBP9.59□□□□□ -0.87
VPS53-207ENST00000570510 TXNL4AP83876 142 aaKnown RBP9.59□□□□□ -0.87
VPS53-207ENST00000570510 LSM12Q3MHD2 195 aaKnown RBP9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms