RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 LAT2Q9GZY6 243 aa15.46■□□□□ 0.07
CLK3-227ENST00000570296 PIGUQ9H490 435 aa15.46■□□□□ 0.07
CLK3-227ENST00000570296 ZNF385DQ9H6B1 395 aa15.46■□□□□ 0.07
CLK3-227ENST00000570296 GRPEL1Q9HAV7 217 aa15.46■□□□□ 0.07
CLK3-227ENST00000570296 ZNF587BE7ETH6 402 aa15.45■□□□□ 0.06
CLK3-227ENST00000570296 NR5A2O00482 541 aa15.45■□□□□ 0.06
CLK3-227ENST00000570296 KRT33AO76009 404 aa15.45■□□□□ 0.06
CLK3-227ENST00000570296 CELA3BP08861 270 aa15.45■□□□□ 0.06
CLK3-227ENST00000570296 CBR1P16152 277 aa15.45■□□□□ 0.06
CLK3-227ENST00000570296 HMOX2P30519 316 aa15.45■□□□□ 0.06
CLK3-227ENST00000570296 HSD17B3P37058 310 aa15.45■□□□□ 0.06
CLK3-227ENST00000570296 HTR6P50406 440 aa15.45■□□□□ 0.06
CLK3-227ENST00000570296 OR2B6P58173 313 aa15.45■□□□□ 0.06
CLK3-227ENST00000570296 SKP2Q13309 424 aa15.45■□□□□ 0.06
CLK3-227ENST00000570296 MMEL1Q495T6 779 aa15.45■□□□□ 0.06
CLK3-227ENST00000570296 OTUD3Q5T2D3 398 aaPredicted RBP15.45■□□□□ 0.06
CLK3-227ENST00000570296 ASPHD2Q6ICH7 369 aa15.45■□□□□ 0.06
CLK3-227ENST00000570296 C16orf87Q6PH81 154 aa15.45■□□□□ 0.06
CLK3-227ENST00000570296 AAED1Q7RTV5 226 aa15.45■□□□□ 0.06
CLK3-227ENST00000570296 METTL6Q8TCB7 284 aa15.45■□□□□ 0.06
CLK3-227ENST00000570296 AURKBQ96GD4 344 aaPredicted RBP15.45■□□□□ 0.06
CLK3-227ENST00000570296 ZNF764Q96H86 408 aaPredicted RBP15.45■□□□□ 0.06
CLK3-227ENST00000570296 NAA11Q9BSU3 229 aaPredicted RBP15.45■□□□□ 0.06
CLK3-227ENST00000570296 CCDC106Q9BWC9 280 aa15.45■□□□□ 0.06
CLK3-227ENST00000570296 NOX3Q9HBY0 568 aa15.45■□□□□ 0.06
CLK3-227ENST00000570296 TMEM181Q9P2C4 612 aa15.45■□□□□ 0.06
CLK3-227ENST00000570296 HMX2A2RU54 273 aa15.44■□□□□ 0.06
CLK3-227ENST00000570296 SLC22A31A6NKX4 558 aa15.44■□□□□ 0.06
CLK3-227ENST00000570296 NCR1O76036 304 aa15.44■□□□□ 0.06
CLK3-227ENST00000570296 NR4A1P22736 598 aa15.44■□□□□ 0.06
CLK3-227ENST00000570296 PCGF2P35227 344 aa15.44■□□□□ 0.06
CLK3-227ENST00000570296 ATP4BP51164 291 aa15.44■□□□□ 0.06
CLK3-227ENST00000570296 SLC35A1P78382 337 aa15.44■□□□□ 0.06
CLK3-227ENST00000570296 CLCQ05315 142 aa15.44■□□□□ 0.06
CLK3-227ENST00000570296 SPDYAQ5MJ70 313 aa15.44■□□□□ 0.06
CLK3-227ENST00000570296 OLFML2AQ68BL7 652 aa15.44■□□□□ 0.06
CLK3-227ENST00000570296 REC114Q7Z4M0 266 aa15.44■□□□□ 0.06
CLK3-227ENST00000570296 RETREG3Q86VR2 466 aa15.44■□□□□ 0.06
CLK3-227ENST00000570296 GSPT2Q8IYD1 628 aaKnown RBP15.44■□□□□ 0.06
CLK3-227ENST00000570296 KIR3DL3Q8N743 410 aa15.44■□□□□ 0.06
CLK3-227ENST00000570296 OR4F5Q8NH21 305 aa15.44■□□□□ 0.06
CLK3-227ENST00000570296 FAM76AQ8TAV0 307 aa15.44■□□□□ 0.06
CLK3-227ENST00000570296 CHMP6Q96FZ7 201 aa15.44■□□□□ 0.06
CLK3-227ENST00000570296 ZNF382Q96SR6 550 aa15.44■□□□□ 0.06
CLK3-227ENST00000570296 VPS11Q9H270 941 aa15.44■□□□□ 0.06
CLK3-227ENST00000570296 PPIAL4EA0A075B759 164 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 PPIAL4CA0A0B4J2A2 164 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 SERTM1A2A2V5 107 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 PPIAL4DF5H284 164 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 URI1O94763 535 aaPredicted RBP15.43■□□□□ 0.06
CLK3-227ENST00000570296 PPIAL4FP0DN26 164 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 VSIG8P0DPA2 414 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 CDC25BP30305 580 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 STX2P32856 288 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 ARR3P36575 388 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 ALDH3B1P43353 468 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 SERPINB8P50452 374 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 MVKQ03426 396 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 MSMPQ1L6U9 139 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 BEAN1Q3B7T3 259 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 VAX1Q5SQQ9 334 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 DCST2Q5T1A1 773 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 AVPI1Q5T686 147 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 KRT80Q6KB66 452 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 GPRIN3Q6ZVF9 776 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 BCL6BQ8N143 479 aaPredicted RBP15.43■□□□□ 0.06
CLK3-227ENST00000570296 ZIC4Q8N9L1 334 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 CIDECQ96AQ7 238 aaPredicted RBP15.43■□□□□ 0.06
CLK3-227ENST00000570296 DNAJA3Q96EY1 480 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 NELFAQ9H3P2 528 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 PIF1Q9H611 641 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 CTPS2Q9NRF8 586 aa15.43■□□□□ 0.06
CLK3-227ENST00000570296 A0A096LPE4 126 aa15.42■□□□□ 0.06
CLK3-227ENST00000570296 A0A1W2PPZ6 126 aa15.42■□□□□ 0.06
CLK3-227ENST00000570296 C3orf80F5H4A9 247 aa15.42■□□□□ 0.06
CLK3-227ENST00000570296 CYP7B1O75881 506 aa15.42■□□□□ 0.06
CLK3-227ENST00000570296 HMGN2P05204 90 aaKnown RBP15.42■□□□□ 0.06
CLK3-227ENST00000570296 SEC24CP53992 1094 aa15.42■□□□□ 0.06
CLK3-227ENST00000570296 SH3BGRP55822 239 aaPredicted RBP15.42■□□□□ 0.06
CLK3-227ENST00000570296 KPRPQ5T749 579 aaPredicted RBP15.42■□□□□ 0.06
CLK3-227ENST00000570296 OR9K2Q8NGE7 335 aa15.42■□□□□ 0.06
CLK3-227ENST00000570296 OR11A1Q9GZK7 315 aa15.42■□□□□ 0.06
CLK3-227ENST00000570296 POLR3HQ9Y535 204 aaPredicted RBP15.42■□□□□ 0.06
CLK3-227ENST00000570296 SKAP2O75563 359 aaPredicted RBP15.41■□□□□ 0.06
CLK3-227ENST00000570296 FRKP42685 505 aaPredicted RBP15.41■□□□□ 0.06
CLK3-227ENST00000570296 RAG2P55895 527 aa15.41■□□□□ 0.06
CLK3-227ENST00000570296 GUCY2DQ02846 1103 aa15.41■□□□□ 0.06
CLK3-227ENST00000570296 LASP1Q14847 261 aaKnown RBP15.41■□□□□ 0.06
CLK3-227ENST00000570296 KLF17Q5JT82 389 aaPredicted RBP15.41■□□□□ 0.06
CLK3-227ENST00000570296 PDZK1Q5T2W1 519 aa15.41■□□□□ 0.06
CLK3-227ENST00000570296 PAQR6Q6TCH4 344 aa15.41■□□□□ 0.06
CLK3-227ENST00000570296 SYT10Q6XYQ8 523 aa15.41■□□□□ 0.06
CLK3-227ENST00000570296 WDFY1Q8IWB7 410 aa15.41■□□□□ 0.06
CLK3-227ENST00000570296 KLHL7Q8IXQ5 586 aa15.41■□□□□ 0.06
CLK3-227ENST00000570296 RAB8BQ92930 207 aa15.41■□□□□ 0.06
CLK3-227ENST00000570296 ZNF385AQ96PM9 386 aaKnown RBP15.41■□□□□ 0.06
CLK3-227ENST00000570296 ALKBH3Q96Q83 286 aaPredicted RBP15.41■□□□□ 0.06
CLK3-227ENST00000570296 SYT3Q9BQG1 590 aa15.41■□□□□ 0.06
CLK3-227ENST00000570296 SF3B5Q9BWJ5 86 aaKnown RBP15.41■□□□□ 0.06
CLK3-227ENST00000570296 CRLF2Q9HC73 371 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms