RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 SERPINB7O75635 380 aa13.32□□□□□ -0.28
VPS39-210ENST00000568357 GOSR1O95249 250 aa13.32□□□□□ -0.28
VPS39-210ENST00000568357 ADAP00813 363 aa13.32□□□□□ -0.28
VPS39-210ENST00000568357 PSMB1P20618 241 aaKnown RBP13.32□□□□□ -0.28
VPS39-210ENST00000568357 CRYGSP22914 178 aa13.32□□□□□ -0.28
VPS39-210ENST00000568357 HTR2AP28223 471 aa13.32□□□□□ -0.28
VPS39-210ENST00000568357 IST1P53990 364 aa13.32□□□□□ -0.28
VPS39-210ENST00000568357 PCBP3P57721 371 aaKnown RBP13.32□□□□□ -0.28
VPS39-210ENST00000568357 RBBP4Q09028 425 aa13.32□□□□□ -0.28
VPS39-210ENST00000568357 CYLC2Q14093 348 aaPredicted RBP13.32□□□□□ -0.28
VPS39-210ENST00000568357 CYP51A1Q16850 503 aa13.32□□□□□ -0.28
VPS39-210ENST00000568357 TRMT5Q32P41 509 aaKnown RBP13.32□□□□□ -0.28
VPS39-210ENST00000568357 NET1Q7Z628 596 aaPredicted RBP13.32□□□□□ -0.28
VPS39-210ENST00000568357 ATG4DQ86TL0 474 aaPredicted RBP13.32□□□□□ -0.28
VPS39-210ENST00000568357 SNX32Q86XE0 403 aa13.32□□□□□ -0.28
VPS39-210ENST00000568357 ARMC8Q8IUR7 673 aa13.32□□□□□ -0.28
VPS39-210ENST00000568357 C11orf65Q8NCR3 313 aa13.32□□□□□ -0.28
VPS39-210ENST00000568357 OR10A6Q8NH74 314 aa13.32□□□□□ -0.28
VPS39-210ENST00000568357 LRRC58Q96CX6 371 aa13.32□□□□□ -0.28
VPS39-210ENST00000568357 ZHX1-C8orf76Q96EF9 292 aa13.32□□□□□ -0.28
VPS39-210ENST00000568357 ZNF607Q96SK3 696 aa13.32□□□□□ -0.28
VPS39-210ENST00000568357 ACTR6Q9GZN1 396 aa13.32□□□□□ -0.28
VPS39-210ENST00000568357 PIF1Q9H611 641 aa13.32□□□□□ -0.28
VPS39-210ENST00000568357 ST6GALNAC2Q9UJ37 374 aa13.32□□□□□ -0.28
VPS39-210ENST00000568357 A8MVM7 634 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 TMEM229AB2RXF0 380 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 TPST2O60704 377 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 EIF1BO60739 113 aaKnown RBP13.31□□□□□ -0.28
VPS39-210ENST00000568357 NPIPB7O75200 414 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 PPP3CBP16298 524 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 IDUAP35475 653 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 SLC16A1P53985 500 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 EGR4Q05215 589 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 OR7A5Q15622 319 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 DUSP7Q16829 419 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 RABL3Q5HYI8 236 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 COQ5Q5HYK3 327 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 SFRP5Q5T4F7 317 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 REP15Q6BDI9 236 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 TMEM99Q8N816 258 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 LSMEM1Q8N8F7 131 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 SMYD1Q8NB12 490 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 PIGXQ8TBF5 258 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 S100PBPQ96BU1 408 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 NAA11Q9BSU3 229 aaPredicted RBP13.31□□□□□ -0.28
VPS39-210ENST00000568357 HDHD5Q9BXW7 423 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 GSX1Q9H4S2 264 aaPredicted RBP13.31□□□□□ -0.28
VPS39-210ENST00000568357 FANCFQ9NPI8 374 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 MRGBPQ9NV56 204 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 ARMCX1Q9P291 453 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 ANGPT4Q9Y264 503 aa13.31□□□□□ -0.28
VPS39-210ENST00000568357 A0A1B0GWA3 101 aa13.3□□□□□ -0.28
VPS39-210ENST00000568357 PRORSD1PA6NEY8 169 aa13.3□□□□□ -0.28
VPS39-210ENST00000568357 MRASO14807 208 aa13.3□□□□□ -0.28
VPS39-210ENST00000568357 KLF4O43474 513 aa13.3□□□□□ -0.28
VPS39-210ENST00000568357 AKR7A3O95154 331 aa13.3□□□□□ -0.28
VPS39-210ENST00000568357 OPN1SWP03999 348 aa13.3□□□□□ -0.28
VPS39-210ENST00000568357 GPIP06744 558 aa13.3□□□□□ -0.28
VPS39-210ENST00000568357 LOXP28300 417 aaPredicted RBP13.3□□□□□ -0.28
VPS39-210ENST00000568357 ADSLP30566 484 aaPredicted RBP13.3□□□□□ -0.28
VPS39-210ENST00000568357 SEC24CP53992 1094 aa13.3□□□□□ -0.28
VPS39-210ENST00000568357 ITGADQ13349 1161 aa13.3□□□□□ -0.28
VPS39-210ENST00000568357 P2RY6Q15077 328 aa13.3□□□□□ -0.28
VPS39-210ENST00000568357 MMEL1Q495T6 779 aa13.3□□□□□ -0.28
VPS39-210ENST00000568357 C1orf140Q5VVS0 124 aa13.3□□□□□ -0.28
VPS39-210ENST00000568357 PAQR6Q6TCH4 344 aa13.3□□□□□ -0.28
VPS39-210ENST00000568357 Q6ZT83 130 aa13.3□□□□□ -0.28
VPS39-210ENST00000568357 CALHM3Q86XJ0 350 aa13.3□□□□□ -0.28
VPS39-210ENST00000568357 ZNF100Q8IYN0 542 aa13.3□□□□□ -0.28
VPS39-210ENST00000568357 OR52E4Q8NGH9 312 aa13.3□□□□□ -0.28
VPS39-210ENST00000568357 NANOS1Q8WY41 292 aaKnown RBP13.3□□□□□ -0.28
VPS39-210ENST00000568357 PIK3IP1Q96FE7 263 aa13.3□□□□□ -0.28
VPS39-210ENST00000568357 HS3ST6Q96QI5 342 aa13.3□□□□□ -0.28
VPS39-210ENST00000568357 TRIM2Q9C040 744 aa13.3□□□□□ -0.28
VPS39-210ENST00000568357 OR10A4Q9H209 315 aa13.3□□□□□ -0.28
VPS39-210ENST00000568357 CCM2LQ9NUG4 571 aaPredicted RBP13.3□□□□□ -0.28
VPS39-210ENST00000568357 EMC3Q9P0I2 261 aa13.3□□□□□ -0.28
VPS39-210ENST00000568357 PLEKHA6Q9Y2H5 1048 aa13.3□□□□□ -0.28
VPS39-210ENST00000568357 NOSIPQ9Y314 301 aaKnown RBP13.3□□□□□ -0.28
VPS39-210ENST00000568357 BBIP1A8MTZ0 92 aa13.29□□□□□ -0.28
VPS39-210ENST00000568357 GPR171O14626 319 aa13.29□□□□□ -0.28
VPS39-210ENST00000568357 LGI1O95970 557 aa13.29□□□□□ -0.28
VPS39-210ENST00000568357 NPPAP01160 153 aa13.29□□□□□ -0.28
VPS39-210ENST00000568357 IGHV3-9P01782 118 aa13.29□□□□□ -0.28
VPS39-210ENST00000568357 PCGF2P35227 344 aa13.29□□□□□ -0.28
VPS39-210ENST00000568357 SLC17A1Q14916 467 aa13.29□□□□□ -0.28
VPS39-210ENST00000568357 MAPRE2Q15555 327 aa13.29□□□□□ -0.28
VPS39-210ENST00000568357 VMACQ2NL98 169 aa13.29□□□□□ -0.28
VPS39-210ENST00000568357 OTUD3Q5T2D3 398 aaPredicted RBP13.29□□□□□ -0.28
VPS39-210ENST00000568357 C6orf89Q6UWU4 347 aa13.29□□□□□ -0.28
VPS39-210ENST00000568357 POU5F2Q8N7G0 328 aa13.29□□□□□ -0.28
VPS39-210ENST00000568357 ZIC4Q8N9L1 334 aa13.29□□□□□ -0.28
VPS39-210ENST00000568357 BHLHE22Q8NFJ8 381 aaPredicted RBP13.29□□□□□ -0.28
VPS39-210ENST00000568357 STEAP2Q8NFT2 490 aa13.29□□□□□ -0.28
VPS39-210ENST00000568357 GPR32P1Q8NGA4 272 aa13.29□□□□□ -0.28
VPS39-210ENST00000568357 OR8J3Q8NGG0 315 aa13.29□□□□□ -0.28
VPS39-210ENST00000568357 STK35Q8TDR2 534 aa13.29□□□□□ -0.28
VPS39-210ENST00000568357 TAMM41Q96BW9 452 aa13.29□□□□□ -0.28
VPS39-210ENST00000568357 PTDSS2Q9BVG9 487 aa13.29□□□□□ -0.28
VPS39-210ENST00000568357 ADPRHL2Q9NX46 363 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms