RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 R3HCC1LQ7Z5L2 792 aaKnown RBP6.32□□□□□ -1.4
VPS4A-203ENST00000564399 C1QL2Q7Z5L3 287 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 SPATA4Q8NEY3 305 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 OR1K1Q8NGR3 316 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 NANPQ8TBE9 248 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 DCAKDQ8WVC6 231 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 C22orf15Q8WYQ4 148 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 L3HYPDHQ96EM0 354 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 METTL2AQ96IZ6 378 aaKnown RBP6.32□□□□□ -1.4
VPS4A-203ENST00000564399 OR7D2Q96RA2 312 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 SDF2Q99470 211 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 CCT7Q99832 543 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 CCDC106Q9BWC9 280 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 NMUR2Q9GZQ4 415 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 GSTO2Q9H4Y5 243 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 UNKLQ9H9P5 680 aaKnown RBP6.32□□□□□ -1.4
VPS4A-203ENST00000564399 SIRT3Q9NTG7 399 aaPredicted RBP6.32□□□□□ -1.4
VPS4A-203ENST00000564399 NINJ2Q9NZG7 142 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 REV1Q9UBZ9 1251 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 MKLN1Q9UL63 735 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 ZNF281Q9Y2X9 895 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 CMAHPQ9Y471 501 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 PTGDR2Q9Y5Y4 395 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 TMED7-TICAM2A0A0A6YYA0 188 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 ARPC4-TTLL3A0A0A6YYG9 625 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 A0A0G2JMP0 313 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 A0A0X1KG70 313 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 NPIPB8E9PQR5 432 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 M0R233 179 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 SLC28A1O00337 649 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 PIP5K1BO14986 540 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 CFLARO15519 480 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 SYNGR3O43761 229 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 FCMRO60667 390 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 STX11O75558 287 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 MPZL1O95297 269 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 HPXP02790 462 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 IGFBP1P08833 259 aaPredicted RBP6.31□□□□□ -1.4
VPS4A-203ENST00000564399 CELA3BP08861 270 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 SNRPAP09012 282 aaKnown RBP6.31□□□□□ -1.4
VPS4A-203ENST00000564399 ACHEP22303 614 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 HPCAL1P37235 193 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 ASMTP46597 345 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 TMEM33P57088 247 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 LMO4P61968 165 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 RPL38P63173 70 aaKnown RBP6.31□□□□□ -1.4
VPS4A-203ENST00000564399 H3F3AP84243 136 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 SNTB2Q13425 540 aaKnown RBP6.31□□□□□ -1.4
VPS4A-203ENST00000564399 PDE7AQ13946 482 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 DAG1Q14118 895 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 ZNF141Q15928 474 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 C3orf36Q3SXR2 165 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 SLC9B1Q4ZJI4 515 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 CFAP157Q5JU67 520 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 ELFN2Q5R3F8 820 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 OTUD3Q5T2D3 398 aaPredicted RBP6.31□□□□□ -1.4
VPS4A-203ENST00000564399 REP15Q6BDI9 236 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 KRT80Q6KB66 452 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 ACSM5Q6NUN0 579 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 OLIG3Q7RTU3 272 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 GPAT4Q86UL3 456 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 ADGRG3Q86Y34 549 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 TMEM99Q8N816 258 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 ZIC4Q8N9L1 334 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 OR7A2PQ8NGA2 310 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 OR4M2Q8NGB6 313 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 OR9K2Q8NGE7 335 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 OR5D16Q8NGK9 328 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 RDH5Q92781 318 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 BCL2L2Q92843 193 aaPredicted RBP6.31□□□□□ -1.4
VPS4A-203ENST00000564399 PMM1Q92871 262 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 TMEM45BQ96B21 275 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 DDIT4LQ96D03 193 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 MTERF3Q96E29 417 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 BOD1Q96IK1 185 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 ZNF385AQ96PM9 386 aaKnown RBP6.31□□□□□ -1.4
VPS4A-203ENST00000564399 ALKBH3Q96Q83 286 aaPredicted RBP6.31□□□□□ -1.4
VPS4A-203ENST00000564399 RACGAP1Q9H0H5 632 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 MS4A5Q9H3V2 200 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 NTN4Q9HB63 628 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 CRLF2Q9HC73 371 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 MOV10Q9HCE1 1003 aaKnown RBP6.31□□□□□ -1.4
VPS4A-203ENST00000564399 ZNF275Q9NSD4 429 aaPredicted RBP6.31□□□□□ -1.4
VPS4A-203ENST00000564399 GPATCH2Q9NW75 528 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 MED29Q9NX70 200 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 CRNNQ9UBG3 495 aaPredicted RBP6.31□□□□□ -1.4
VPS4A-203ENST00000564399 KCNE5Q9UJ90 142 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 PCDHGB4Q9UN71 923 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 TMED7Q9Y3B3 224 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 CCL27Q9Y4X3 112 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 CORINQ9Y5Q5 1042 aa6.31□□□□□ -1.4
VPS4A-203ENST00000564399 IGHV2OR16-5A0A0B4J2B6 119 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 CENPVL1A0A0U1RR11 272 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 DUXAA6NLW8 204 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 H3BQF6 201 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 PLPP2O43688 288 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 SCN2BO60939 215 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 UGT2B17O75795 530 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 URI1O94763 535 aaPredicted RBP6.3□□□□□ -1.4
VPS4A-203ENST00000564399 PRSS23O95084 383 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms