RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 AGAP5A6NIR3 686 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 KLF11O14901 512 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 ZNF208O43345 1280 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 CHRM4P08173 479 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 MYZAPP0CAP1 466 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 IGHV4-31P0DP07 118 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 BMP4P12644 408 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 USF1P22415 310 aaPredicted RBP14.75□□□□□ -0.05
CLN3-211ENST00000564091 APOBEC3AP31941 199 aaPredicted RBP14.75□□□□□ -0.05
CLN3-211ENST00000564091 S100A3P33764 101 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 SLC1A3P43003 542 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 CHRNB3Q05901 458 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 FAM174BQ3ZCQ3 159 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 HIKESHIQ53FT3 197 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 CYB5R2Q6BCY4 276 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 C17orf78Q8N4C9 275 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 ZIC4Q8N9L1 334 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 C1orf162Q8NEQ5 155 aaPredicted RBP14.75□□□□□ -0.05
CLN3-211ENST00000564091 PROX1Q92786 737 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 PMM1Q92871 262 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 FBXO17Q96EF6 278 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 TEX37Q96LM6 180 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 NUF2Q9BZD4 464 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 MOKQ9UQ07 419 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 AMDHD2Q9Y303 409 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 RAP2CQ9Y3L5 183 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 PMF1-BGLAPU3KQ54 211 aa14.75□□□□□ -0.05
CLN3-211ENST00000564091 CFAP73A6NFT4 308 aa14.74□□□□□ -0.05
CLN3-211ENST00000564091 ZNF16P17020 682 aaPredicted RBP14.74□□□□□ -0.05
CLN3-211ENST00000564091 MPGP29372 298 aa14.74□□□□□ -0.05
CLN3-211ENST00000564091 RPL14P50914 215 aaKnown RBP14.74□□□□□ -0.05
CLN3-211ENST00000564091 PRPS1P60891 318 aa14.74□□□□□ -0.05
CLN3-211ENST00000564091 TGFBR3Q03167 851 aa14.74□□□□□ -0.05
CLN3-211ENST00000564091 CEACAM7Q14002 265 aa14.74□□□□□ -0.05
CLN3-211ENST00000564091 MST1LQ2TV78 715 aa14.74□□□□□ -0.05
CLN3-211ENST00000564091 OTUD3Q5T2D3 398 aaPredicted RBP14.74□□□□□ -0.05
CLN3-211ENST00000564091 PAQR6Q6TCH4 344 aa14.74□□□□□ -0.05
CLN3-211ENST00000564091 CMIPQ8IY22 773 aa14.74□□□□□ -0.05
CLN3-211ENST00000564091 TMEM99Q8N816 258 aa14.74□□□□□ -0.05
CLN3-211ENST00000564091 OR9K2Q8NGE7 335 aa14.74□□□□□ -0.05
CLN3-211ENST00000564091 CCDC115Q96NT0 180 aa14.74□□□□□ -0.05
CLN3-211ENST00000564091 ZNF385AQ96PM9 386 aaKnown RBP14.74□□□□□ -0.05
CLN3-211ENST00000564091 TRNT1Q96Q11 434 aaKnown RBP14.74□□□□□ -0.05
CLN3-211ENST00000564091 SORT1Q99523 831 aa14.74□□□□□ -0.05
CLN3-211ENST00000564091 CCDC154A6NI56 674 aa14.73□□□□□ -0.05
CLN3-211ENST00000564091 E9PBE3 544 aa14.73□□□□□ -0.05
CLN3-211ENST00000564091 AKR7A3O95154 331 aa14.73□□□□□ -0.05
CLN3-211ENST00000564091 F12P00748 615 aaPredicted RBP14.73□□□□□ -0.05
CLN3-211ENST00000564091 GSNP06396 782 aa14.73□□□□□ -0.05
CLN3-211ENST00000564091 LBPP18428 481 aa14.73□□□□□ -0.05
CLN3-211ENST00000564091 CDKN2CP42773 168 aa14.73□□□□□ -0.05
CLN3-211ENST00000564091 SLC1A6P48664 564 aa14.73□□□□□ -0.05
CLN3-211ENST00000564091 CLNS1AP54105 237 aaKnown RBP14.73□□□□□ -0.05
CLN3-211ENST00000564091 UFM1P61960 85 aa14.73□□□□□ -0.05
CLN3-211ENST00000564091 EPS8Q12929 822 aa14.73□□□□□ -0.05
CLN3-211ENST00000564091 OR7A5Q15622 319 aa14.73□□□□□ -0.05
CLN3-211ENST00000564091 SWI5Q1ZZU3 235 aa14.73□□□□□ -0.05
CLN3-211ENST00000564091 COX20Q5RI15 118 aa14.73□□□□□ -0.05
CLN3-211ENST00000564091 MRPL2Q5T653 305 aaKnown RBP14.73□□□□□ -0.05
CLN3-211ENST00000564091 LRRC74BQ6ZQY2 392 aa14.73□□□□□ -0.05
CLN3-211ENST00000564091 AAED1Q7RTV5 226 aa14.73□□□□□ -0.05
CLN3-211ENST00000564091 PNPT1Q8TCS8 783 aaKnown RBP14.73□□□□□ -0.05
CLN3-211ENST00000564091 WDR60Q8WVS4 1066 aa14.73□□□□□ -0.05
CLN3-211ENST00000564091 TMEM45BQ96B21 275 aa14.73□□□□□ -0.05
CLN3-211ENST00000564091 AURKBQ96GD4 344 aaPredicted RBP14.73□□□□□ -0.05
CLN3-211ENST00000564091 MTHFD2LQ9H903 347 aaPredicted RBP14.73□□□□□ -0.05
CLN3-211ENST00000564091 PNPOQ9NVS9 261 aa14.73□□□□□ -0.05
CLN3-211ENST00000564091 RLIMQ9NVW2 624 aa14.73□□□□□ -0.05
CLN3-211ENST00000564091 TMEM160Q9NX00 188 aa14.73□□□□□ -0.05
CLN3-211ENST00000564091 BTNL2Q9UIR0 455 aa14.73□□□□□ -0.05
CLN3-211ENST00000564091 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.73□□□□□ -0.05
CLN3-211ENST00000564091 LIPT2A6NK58 231 aa14.72□□□□□ -0.05
CLN3-211ENST00000564091 LMX1BO60663 402 aa14.72□□□□□ -0.05
CLN3-211ENST00000564091 GKN3PP0CG01 181 aa14.72□□□□□ -0.05
CLN3-211ENST00000564091 NR2F1P10589 423 aa14.72□□□□□ -0.05
CLN3-211ENST00000564091 IL7RP16871 459 aa14.72□□□□□ -0.05
CLN3-211ENST00000564091 BGNP21810 368 aa14.72□□□□□ -0.05
CLN3-211ENST00000564091 LSM11P83369 360 aaKnown RBP eCLIP14.72□□□□□ -0.05
CLN3-211ENST00000564091 SRSF2Q01130 221 aaKnown RBP14.72□□□□□ -0.05
CLN3-211ENST00000564091 LGALS3BPQ08380 585 aa14.72□□□□□ -0.05
CLN3-211ENST00000564091 GNA13Q14344 377 aa14.72□□□□□ -0.05
CLN3-211ENST00000564091 GGTLC2Q14390 218 aa14.72□□□□□ -0.05
CLN3-211ENST00000564091 DPY19L1Q2PZI1 675 aa14.72□□□□□ -0.05
CLN3-211ENST00000564091 KRTAP24-1Q3LI83 254 aa14.72□□□□□ -0.05
CLN3-211ENST00000564091 KLHL24Q6TFL4 600 aa14.72□□□□□ -0.05
CLN3-211ENST00000564091 ZNF621Q6ZSS3 439 aa14.72□□□□□ -0.05
CLN3-211ENST00000564091 GPAT4Q86UL3 456 aa14.72□□□□□ -0.05
CLN3-211ENST00000564091 AENQ8WTP8 325 aaKnown RBP14.72□□□□□ -0.05
CLN3-211ENST00000564091 PANX1Q96RD7 426 aa14.72□□□□□ -0.05
CLN3-211ENST00000564091 ADAM19Q9H013 955 aa14.72□□□□□ -0.05
CLN3-211ENST00000564091 SHARPINQ9H0F6 387 aa14.72□□□□□ -0.05
CLN3-211ENST00000564091 IGHV1-18A0A0C4DH31 117 aa14.71□□□□□ -0.05
CLN3-211ENST00000564091 FAAHO00519 579 aa14.71□□□□□ -0.05
CLN3-211ENST00000564091 BIRC5O15392 142 aa14.71□□□□□ -0.05
CLN3-211ENST00000564091 LGI1O95970 557 aa14.71□□□□□ -0.05
CLN3-211ENST00000564091 WNT11O96014 354 aa14.71□□□□□ -0.05
CLN3-211ENST00000564091 GPIP06744 558 aa14.71□□□□□ -0.05
CLN3-211ENST00000564091 CSF3P09919 207 aa14.71□□□□□ -0.05
CLN3-211ENST00000564091 ALDOCP09972 364 aaKnown RBP14.71□□□□□ -0.05
CLN3-211ENST00000564091 RPS4Y1P22090 263 aaKnown RBP14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms