RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 RNF138Q8WVD3 245 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 ACOT12Q8WYK0 555 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 ZBTB8AQ96BR9 441 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 KCTD12Q96CX2 325 aaKnown RBP6.87□□□□□ -1.31
VPS39-204ENST00000561818 KCTD7Q96MP8 289 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 ARHGAP9Q9BRR9 750 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 DCUN1D5Q9BTE7 237 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 RSPO3Q9BXY4 272 aaPredicted RBP6.87□□□□□ -1.31
VPS39-204ENST00000561818 POTEKPQ9BYX7 375 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 PLA2G12AQ9BZM1 189 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 TMEM9BQ9NQ34 198 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 MEPEQ9NQ76 525 aaPredicted RBP6.87□□□□□ -1.31
VPS39-204ENST00000561818 FLRT3Q9NZU0 649 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 MYOTQ9UBF9 498 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 GRHPRQ9UBQ7 328 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 PISDQ9UG56 409 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 CHRNA9Q9UGM1 479 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 TEKT2Q9UIF3 430 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 PADI1Q9ULC6 663 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 DTX4Q9Y2E6 619 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 CARD8Q9Y2G2 431 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 LSM2Q9Y333 95 aaKnown RBP6.87□□□□□ -1.31
VPS39-204ENST00000561818 UNC13CQ8NB66 2214 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 ADAMTS20P59510 1910 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 NSG1A0A0A6YYJ2 146 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 NPIPA5A0A0B4J1W7 369 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 CENPVL1A0A0U1RR11 272 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 IQCMA0A1B0GVH7 501 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 A0A1W2PRG6 482 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 DAPL1A0PJW8 107 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 ANKRD33BA6NCL7 494 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 ANKRD61A6NGH8 418 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 VGLL3A8MV65 326 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 NPIPA7E9PJI5 369 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 LOC110117498-PIK3R3F6TDL0 507 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 LINC01387J3KSC0 135 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 HRKO00198 91 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 DNPH1O43598 174 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 FADS1O60427 444 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 FZD7O75084 574 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 CSO75390 466 aaKnown RBP6.86□□□□□ -1.31
VPS39-204ENST00000561818 GATBO75879 557 aaKnown RBP6.86□□□□□ -1.31
VPS39-204ENST00000561818 ARL6IP5O75915 188 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 NADKO95544 446 aaPredicted RBP6.86□□□□□ -1.31
VPS39-204ENST00000561818 PDGFBP01127 241 aaPredicted RBP6.86□□□□□ -1.31
VPS39-204ENST00000561818 IGHMP01871 453 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 LCKP06239 509 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 ASAH2BP0C7U1 165 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 NPIPA8P0DM63 369 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 ZNF182P17025 639 aaPredicted RBP6.86□□□□□ -1.31
VPS39-204ENST00000561818 MAKP20794 623 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 PTBP1P26599 531 aaKnown RBP eCLIP6.86□□□□□ -1.31
VPS39-204ENST00000561818 MAPK3P27361 379 aaPredicted RBP6.86□□□□□ -1.31
VPS39-204ENST00000561818 TGFBR2P37173 567 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 MAP2K4P45985 399 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 GBX2P52951 348 aaPredicted RBP6.86□□□□□ -1.31
VPS39-204ENST00000561818 DEFA1P59665 94 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 DEFA3P59666 94 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 ITGADQ13349 1161 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 SSPNQ14714 243 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 NNATQ16517 81 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 GLYR1Q49A26 553 aaPredicted RBP6.86□□□□□ -1.31
VPS39-204ENST00000561818 C3orf33Q6P1S2 294 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 MZT2AQ6P582 158 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 C16orf87Q6PH81 154 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 CD200R1LQ6Q8B3 271 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 Q6ZPB1 254 aaPredicted RBP6.86□□□□□ -1.31
VPS39-204ENST00000561818 NDUFAF7Q7L592 441 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 FAM220AQ7Z4H9 259 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 TPRA1Q86W33 373 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 RAB43Q86YS6 212 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 CPOQ8IVL8 374 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 NAXDQ8IW45 347 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 PHC2Q8IXK0 858 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 IQCF1Q8N6M8 205 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 C10orf53Q8N6V4 93 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 FAM98AQ8NCA5 519 aaKnown RBP6.86□□□□□ -1.31
VPS39-204ENST00000561818 SIMC1Q8NDZ2 872 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 OR8D4Q8NGM9 314 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 OR13C2Q8NGS9 318 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 OR4Q3Q8NH05 313 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 OR5J2Q8NH18 312 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 PFN4Q8NHR9 129 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 MFSD8Q8NHS3 518 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 MCFD2Q8NI22 146 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 TBC1D15Q8TC07 691 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 ELP5Q8TE02 316 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.86□□□□□ -1.31
VPS39-204ENST00000561818 ASB17Q8WXJ9 295 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 MR1Q95460 341 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 SPACA9Q96E40 222 aaPredicted RBP6.86□□□□□ -1.31
VPS39-204ENST00000561818 CEP19Q96LK0 163 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 ERMAPQ96PL5 475 aaPredicted RBP6.86□□□□□ -1.31
VPS39-204ENST00000561818 GPA33Q99795 319 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 WFDC6Q9BQY6 131 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 DSN1Q9H410 356 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 METTL7AQ9H8H3 244 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 MCCC2Q9HCC0 563 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 FANCFQ9NPI8 374 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 SLC22A11Q9NSA0 550 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms