RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 GPIP06744 558 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 TROVE2P10155 538 aaKnown RBP eCLIP13.85□□□□□ -0.19
VPS39-203ENST00000561797 AQP1P29972 269 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 ADSLP30566 484 aaPredicted RBP13.85□□□□□ -0.19
VPS39-203ENST00000561797 NTF4P34130 210 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 SLC16A1P53985 500 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 H3F3AP84243 136 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 NFYCQ13952 458 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 TAB1Q15750 504 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 STK11Q15831 433 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 GLIPR1L2Q4G1C9 344 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 METTL21CQ5VZV1 264 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 TMEM99Q8N816 258 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 HSD17B8Q92506 261 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 C3orf49Q96BT1 292 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 ANKRD27Q96NW4 1050 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 CGREF1Q99674 301 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 SPATA5L1Q9BVQ7 753 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 TAPBPLQ9BX59 468 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 TMEM38AQ9H6F2 299 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 FGFR1OP2Q9NVK5 253 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 ADPRHL2Q9NX46 363 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 RPS6KB2Q9UBS0 482 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 PRDM4Q9UKN5 801 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 HIVEP1P15822 2718 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 CELSR1Q9NYQ6 3014 aa13.84□□□□□ -0.19
VPS39-203ENST00000561797 LIPT2A6NK58 231 aa13.84□□□□□ -0.19
VPS39-203ENST00000561797 VIMP08670 466 aaKnown RBP13.84□□□□□ -0.19
VPS39-203ENST00000561797 PRKAR1BP31321 381 aa13.84□□□□□ -0.19
VPS39-203ENST00000561797 ARFIP2P53365 341 aa13.84□□□□□ -0.19
VPS39-203ENST00000561797 NR1H2P55055 460 aa13.84□□□□□ -0.19
VPS39-203ENST00000561797 MTPNP58546 118 aa13.84□□□□□ -0.19
VPS39-203ENST00000561797 SELPLGQ14242 412 aa13.84□□□□□ -0.19
VPS39-203ENST00000561797 ADRM1Q16186 407 aa13.84□□□□□ -0.19
VPS39-203ENST00000561797 C1orf140Q5VVS0 124 aa13.84□□□□□ -0.19
VPS39-203ENST00000561797 FBXW9Q5XUX1 488 aa13.84□□□□□ -0.19
VPS39-203ENST00000561797 PAQR6Q6TCH4 344 aa13.84□□□□□ -0.19
VPS39-203ENST00000561797 CASP12Q6UXS9 341 aa13.84□□□□□ -0.19
VPS39-203ENST00000561797 ZNF704Q6ZNC4 412 aaPredicted RBP13.84□□□□□ -0.19
VPS39-203ENST00000561797 ATG4DQ86TL0 474 aaPredicted RBP13.84□□□□□ -0.19
VPS39-203ENST00000561797 COMTD1Q86VU5 262 aa13.84□□□□□ -0.19
VPS39-203ENST00000561797 TGIF2LYQ8IUE0 185 aa13.84□□□□□ -0.19
VPS39-203ENST00000561797 DPP10Q8N608 796 aa13.84□□□□□ -0.19
VPS39-203ENST00000561797 ZNF607Q96SK3 696 aa13.84□□□□□ -0.19
VPS39-203ENST00000561797 PRR14Q9BWN1 585 aa13.84□□□□□ -0.19
VPS39-203ENST00000561797 BEX4Q9NWD9 120 aaPredicted RBP13.84□□□□□ -0.19
VPS39-203ENST00000561797 FLVCR1Q9Y5Y0 555 aa13.84□□□□□ -0.19
VPS39-203ENST00000561797 ITPR3Q14573 2671 aa13.84□□□□□ -0.19
VPS39-203ENST00000561797 CIB4A0PJX0 185 aa13.83□□□□□ -0.2
VPS39-203ENST00000561797 ELOA3DA6NLF2 546 aaPredicted RBP13.83□□□□□ -0.2
VPS39-203ENST00000561797 CCT8L1PA6NM43 557 aa13.83□□□□□ -0.2
VPS39-203ENST00000561797 CD99P14209 185 aa13.83□□□□□ -0.2
VPS39-203ENST00000561797 GUCY1A3Q02108 690 aa13.83□□□□□ -0.2
VPS39-203ENST00000561797 FAPQ12884 760 aa13.83□□□□□ -0.2
VPS39-203ENST00000561797 SLC17A1Q14916 467 aa13.83□□□□□ -0.2
VPS39-203ENST00000561797 CYP51A1Q16850 503 aa13.83□□□□□ -0.2
VPS39-203ENST00000561797 ELOA3BQ3SY89 546 aa13.83□□□□□ -0.2
VPS39-203ENST00000561797 HSP90B2PQ58FF3 399 aa13.83□□□□□ -0.2
VPS39-203ENST00000561797 TMEM225Q6GV28 225 aa13.83□□□□□ -0.2
VPS39-203ENST00000561797 CGB2Q6NT52 195 aa13.83□□□□□ -0.2
VPS39-203ENST00000561797 DHRS4L2Q6PKH6 230 aa13.83□□□□□ -0.2
VPS39-203ENST00000561797 PTOV1Q86YD1 416 aa13.83□□□□□ -0.2
VPS39-203ENST00000561797 ZNF433Q8N7K0 673 aaPredicted RBP13.83□□□□□ -0.2
VPS39-203ENST00000561797 HIPK4Q8NE63 616 aa13.83□□□□□ -0.2
VPS39-203ENST00000561797 ELOA3Q8NG57 546 aa13.83□□□□□ -0.2
VPS39-203ENST00000561797 RNF217Q8TC41 542 aa13.83□□□□□ -0.2
VPS39-203ENST00000561797 TSPEARQ8WU66 669 aa13.83□□□□□ -0.2
VPS39-203ENST00000561797 SLC35B4Q969S0 331 aa13.83□□□□□ -0.2
VPS39-203ENST00000561797 SLC25A36Q96CQ1 311 aa13.83□□□□□ -0.2
VPS39-203ENST00000561797 CCL19Q99731 98 aa13.83□□□□□ -0.2
VPS39-203ENST00000561797 NGBQ9NPG2 151 aa13.83□□□□□ -0.2
VPS39-203ENST00000561797 ANGPT4Q9Y264 503 aa13.83□□□□□ -0.2
VPS39-203ENST00000561797 SLC9A8Q9Y2E8 581 aa13.83□□□□□ -0.2
VPS39-203ENST00000561797 ROS1P08922 2347 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 PRORSD1PA6NEY8 169 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 TMEM229AB2RXF0 380 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 FBP2O00757 339 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 SMPD2O60906 423 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 SERPINB7O75635 380 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 RAD51DO75771 328 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 AHSA1O95433 338 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 CNOT4O95628 575 aaKnown RBP13.82□□□□□ -0.2
VPS39-203ENST00000561797 GGT1P19440 569 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 COX5AP20674 150 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 HTR2AP28223 471 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 RPS5P46782 204 aaKnown RBP13.82□□□□□ -0.2
VPS39-203ENST00000561797 FOXG1P55316 489 aaPredicted RBP13.82□□□□□ -0.2
VPS39-203ENST00000561797 ADAM8P78325 824 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 NKX6-1P78426 367 aaPredicted RBP13.82□□□□□ -0.2
VPS39-203ENST00000561797 DMTNQ08495 405 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 PPA1Q15181 289 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 NCMAPQ5T1S8 102 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 C9orf135Q5VTT2 229 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 C20orf204Q6ZNR8 217 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 GPAT4Q86UL3 456 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 ARMC8Q8IUR7 673 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 C11orf65Q8NCR3 313 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 OR9K2Q8NGE7 335 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 OR52E4Q8NGH9 312 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 STK35Q8TDR2 534 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms