RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 RPS4Y1P22090 263 aaKnown RBP10.21□□□□□ -0.77
USP3-220ENST00000561381 TACR3P29371 465 aa10.21□□□□□ -0.77
USP3-220ENST00000561381 MAGEA8P43361 318 aa10.21□□□□□ -0.77
USP3-220ENST00000561381 CLK1P49759 484 aaKnown RBP10.21□□□□□ -0.77
USP3-220ENST00000561381 POLR2HP52434 150 aaKnown RBP10.21□□□□□ -0.77
USP3-220ENST00000561381 NUDT6P53370 316 aa10.21□□□□□ -0.77
USP3-220ENST00000561381 SLC25A3Q00325 362 aa10.21□□□□□ -0.77
USP3-220ENST00000561381 STX3Q13277 289 aa10.21□□□□□ -0.77
USP3-220ENST00000561381 MREGQ8N565 214 aa10.21□□□□□ -0.77
USP3-220ENST00000561381 PNPT1Q8TCS8 783 aaKnown RBP10.21□□□□□ -0.77
USP3-220ENST00000561381 RADILQ96JH8 1075 aa10.21□□□□□ -0.77
USP3-220ENST00000561381 TRNT1Q96Q11 434 aaKnown RBP10.21□□□□□ -0.77
USP3-220ENST00000561381 PANX1Q96RD7 426 aa10.21□□□□□ -0.77
USP3-220ENST00000561381 DHRS9Q9BPW9 319 aa10.21□□□□□ -0.77
USP3-220ENST00000561381 BARX1Q9HBU1 254 aaPredicted RBP10.21□□□□□ -0.77
USP3-220ENST00000561381 SSU72Q9NP77 194 aaKnown RBP10.21□□□□□ -0.77
USP3-220ENST00000561381 SLC7A10Q9NS82 523 aa10.21□□□□□ -0.77
USP3-220ENST00000561381 CBLN4Q9NTU7 201 aa10.21□□□□□ -0.77
USP3-220ENST00000561381 AIG1Q9NVV5 245 aa10.21□□□□□ -0.77
USP3-220ENST00000561381 RLIMQ9NVW2 624 aa10.21□□□□□ -0.77
USP3-220ENST00000561381 BTNL2Q9UIR0 455 aa10.21□□□□□ -0.77
USP3-220ENST00000561381 TRAPPC4Q9Y296 219 aa10.21□□□□□ -0.77
USP3-220ENST00000561381 FLVCR1Q9Y5Y0 555 aa10.21□□□□□ -0.77
USP3-220ENST00000561381 FAM234BA2RU67 622 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 TM9SF1O15321 606 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 PTAFRP25105 342 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 FABP6P51161 128 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 SLC35A1P78382 337 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 BST1Q10588 318 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 EPS8Q12929 822 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 ATRQ13535 2644 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 SLC17A1Q14916 467 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 MAPK11Q15759 364 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 NRF1Q16656 503 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 DPY19L1Q2PZI1 675 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 MRPL2Q5T653 305 aaKnown RBP10.2□□□□□ -0.78
USP3-220ENST00000561381 TSPO2Q5TGU0 170 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 OGFOD2Q6N063 350 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 HMBOX1Q6NT76 420 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 KLHL17Q6TDP4 642 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 LRRC74BQ6ZQY2 392 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 ZNF621Q6ZSS3 439 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 SSX8Q7RTT4 187 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 CMIPQ8IY22 773 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 FBXL14Q8N1E6 418 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 MUC15Q8N387 334 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 OR10H5Q8NGA6 315 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 WDR60Q8WVS4 1066 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 DDIT4LQ96D03 193 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 ADAD1Q96M93 576 aaKnown RBP10.2□□□□□ -0.78
USP3-220ENST00000561381 OR52E6Q96RD3 313 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 PAIP2Q9BPZ3 127 aaKnown RBP10.2□□□□□ -0.78
USP3-220ENST00000561381 RHNO1Q9BSD3 238 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 AMBRA1Q9C0C7 1298 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 CENPHQ9H3R5 247 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 WDR55Q9H6Y2 383 aaPredicted RBP10.2□□□□□ -0.78
USP3-220ENST00000561381 KCNK9Q9NPC2 374 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 SLC6A13Q9NSD5 602 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 UPB1Q9UBR1 384 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 MGAT4BQ9UQ53 548 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 GPR45Q9Y5Y3 372 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 COL6A5A8TX70 2615 aa10.2□□□□□ -0.78
USP3-220ENST00000561381 CFAP73A6NFT4 308 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 ZNF208O43345 1280 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 TLX2O43763 284 aaPredicted RBP10.19□□□□□ -0.78
USP3-220ENST00000561381 LY6HO94772 140 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 AKR7A3O95154 331 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 PGRP06401 933 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 GKN3PP0CG01 181 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 NR2F1P10589 423 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 IL7RP16871 459 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 FKBP2P26885 142 aaKnown RBP10.19□□□□□ -0.78
USP3-220ENST00000561381 EPHA3P29320 983 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 SLC1A3P43003 542 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 HTR3AP46098 478 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 BNIP2Q12982 314 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 CEACAM7Q14002 265 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 TNFAIP8L3Q5GJ75 292 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 OR7E24Q6IFN5 339 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 PAQR6Q6TCH4 344 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 VRK2Q86Y07 508 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 HIPK1Q86Z02 1210 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 LRRC34Q8IZ02 419 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 ZNF525Q8N782 197 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 TMEM99Q8N816 258 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 ZIC4Q8N9L1 334 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 SPATA3Q8NHX4 192 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 PMM1Q92871 262 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 ZNF385AQ96PM9 386 aaKnown RBP10.19□□□□□ -0.78
USP3-220ENST00000561381 NAA11Q9BSU3 229 aaPredicted RBP10.19□□□□□ -0.78
USP3-220ENST00000561381 PARD6BQ9BYG5 372 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 ADAM19Q9H013 955 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 MTHFD2LQ9H903 347 aaPredicted RBP10.19□□□□□ -0.78
USP3-220ENST00000561381 SLC17A5Q9NRA2 495 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 SLC9A8Q9Y2E8 581 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 ATP23Q9Y6H3 246 aa10.19□□□□□ -0.78
USP3-220ENST00000561381 YLPM1P49750 1951 aaKnown RBP10.19□□□□□ -0.78
USP3-220ENST00000561381 LIPT2A6NK58 231 aa10.18□□□□□ -0.78
USP3-220ENST00000561381 A8MV72 311 aaPredicted RBP10.18□□□□□ -0.78
USP3-220ENST00000561381 ATP6V1G2-DDX39BF2Z307 99 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms