RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 VASNQ6EMK4 673 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 KCTD8Q6ZWB6 473 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 TMEM179BQ7Z7N9 219 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF283Q8N7M2 679 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 TMEM99Q8N816 258 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 FDCSPQ8NFU4 85 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 GPR32P1Q8NGA4 272 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 FLVCR1-AS1Q8TAF5 88 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 MYDGFQ969H8 173 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 HS6ST2Q96MM7 605 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 WFDC6Q9BQY6 131 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 SAP130Q9H0E3 1048 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF385DQ9H6B1 395 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 PLGRKTQ9HBL7 147 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 NEK6Q9HC98 313 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 ABCB9Q9NP78 766 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 LANCL2Q9NS86 450 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 SIDT1Q9NXL6 827 aaKnown RBP4.97□□□□□ -1.61
VPS13C-209ENST00000560637 TAS2R16Q9NYV7 291 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 ABCD2Q9UBJ2 740 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 LAMP5Q9UJQ1 280 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 CES1P1Q9UKY3 287 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 GRIP1Q9Y3R0 1128 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.97□□□□□ -1.61
VPS13C-209ENST00000560637 BLACEA4D250 179 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 A6NIN4 97 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 B4E171 279 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 MRPL33O75394 65 aaKnown RBP4.96□□□□□ -1.61
VPS13C-209ENST00000560637 LGI1O95970 557 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 IGKV1D-16P01601 117 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 ITGB2P05107 769 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 FGF5P12034 268 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 PRPH2P23942 346 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 ELAVL4P26378 380 aaKnown RBP4.96□□□□□ -1.61
VPS13C-209ENST00000560637 PSMB10P40306 273 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 TSPAN7P41732 249 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 SNU13P55769 128 aaKnown RBP4.96□□□□□ -1.61
VPS13C-209ENST00000560637 LY6DQ14210 128 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 ADRM1Q16186 407 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 SWI5Q1ZZU3 235 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 SLC25A25Q6KCM7 469 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 TMEM102Q8N9M5 508 aaPredicted RBP4.96□□□□□ -1.61
VPS13C-209ENST00000560637 ZCCHC14Q8WYQ9 949 aaKnown RBP4.96□□□□□ -1.61
VPS13C-209ENST00000560637 ARL5BQ96KC2 179 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 VSTM2LQ96N03 204 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 RDH12Q96NR8 316 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 ALKBH3Q96Q83 286 aaPredicted RBP4.96□□□□□ -1.61
VPS13C-209ENST00000560637 STACQ99469 402 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 TTYH2Q9BSA4 534 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 FAM192AQ9GZU8 254 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 TMEM38AQ9H6F2 299 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 A4GALTQ9NPC4 353 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 FAM118AQ9NWS6 357 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 TAS2R7Q9NYW3 318 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 CHRNA9Q9UGM1 479 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 OSGIN1Q9UJX0 560 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 TMEM5Q9Y2B1 443 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 MED13Q9UHV7 2174 aa4.96□□□□□ -1.61
VPS13C-209ENST00000560637 SPTBN5Q9NRC6 3674 aaKnown RBP4.96□□□□□ -1.61
VPS13C-209ENST00000560637 A0A087WV62 115 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 C7orf72A4D263 438 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 AHCYL1O43865 530 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 TRIM3O75382 744 aaPredicted RBP4.96□□□□□ -1.62
VPS13C-209ENST00000560637 BMP5P22003 454 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 CD96P40200 585 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 SLC6A8P48029 635 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 SERPINB10P48595 397 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 DAPP51397 102 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 P2RX1P51575 399 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 PRSS12P56730 875 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 ADAM8P78325 824 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 CRMP1Q14194 572 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 RNF220Q5VTB9 566 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 C1orf140Q5VVS0 124 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 ASB18Q6ZVZ8 466 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 SLC22A16Q86VW1 577 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 ZNF440Q8IYI8 595 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 SVOPQ8N4V2 548 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 BOLLQ8N9W6 283 aaKnown RBP4.96□□□□□ -1.62
VPS13C-209ENST00000560637 OR4F15Q8NGB8 312 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 OR5W2Q8NH69 310 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 NEK7Q8TDX7 302 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 KTI12Q96EK9 354 aaPredicted RBP4.96□□□□□ -1.62
VPS13C-209ENST00000560637 ZNF845Q96IR2 970 aaPredicted RBP4.96□□□□□ -1.62
VPS13C-209ENST00000560637 S100A13Q99584 98 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 ULBP2Q9BZM5 246 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 AGPAT4Q9NRZ5 378 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 C20orf141Q9NUB4 165 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 MYEF2Q9P2K5 600 aaKnown RBP4.96□□□□□ -1.62
VPS13C-209ENST00000560637 ERVK-18Q9QC07 812 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 MALT1Q9UDY8 824 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 NOX1Q9Y5S8 564 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 SCN8AQ9UQD0 1980 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 FRG2CA6NGY1 282 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 OR2T1O43869 369 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 NKX2-2O95096 273 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 FARS2O95363 451 aaKnown RBP4.96□□□□□ -1.62
VPS13C-209ENST00000560637 IFNGR1P15260 489 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 CHMP24386 653 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 EDNRAP25101 427 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms