RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 TMEM43Q9BTV4 400 aa19.49■□□□□ 0.71
SNX1-210ENST00000560260 MMADHCQ9H3L0 296 aaPredicted RBP19.49■□□□□ 0.71
SNX1-210ENST00000560260 LIPT2A6NK58 231 aa19.48■□□□□ 0.71
SNX1-210ENST00000560260 AQP12BA6NM10 295 aa19.48■□□□□ 0.71
SNX1-210ENST00000560260 FTCDNL1E5RQL4 147 aa19.48■□□□□ 0.71
SNX1-210ENST00000560260 SULT2B1O00204 365 aa19.48■□□□□ 0.71
SNX1-210ENST00000560260 MT-ND1P03886 318 aa19.48■□□□□ 0.71
SNX1-210ENST00000560260 ENPP1P22413 925 aa19.48■□□□□ 0.71
SNX1-210ENST00000560260 FKBP2P26885 142 aaKnown RBP19.48■□□□□ 0.71
SNX1-210ENST00000560260 CEACAM8P31997 349 aaPredicted RBP19.48■□□□□ 0.71
SNX1-210ENST00000560260 UGT2B15P54855 530 aa19.48■□□□□ 0.71
SNX1-210ENST00000560260 RAC3P60763 192 aa19.48■□□□□ 0.71
SNX1-210ENST00000560260 LSM11P83369 360 aaKnown RBP eCLIP19.48■□□□□ 0.71
SNX1-210ENST00000560260 SF3B4Q15427 424 aaKnown RBP eCLIP19.48■□□□□ 0.71
SNX1-210ENST00000560260 RIPPLY2Q5TAB7 128 aa19.48■□□□□ 0.71
SNX1-210ENST00000560260 PPP4R4Q6NUP7 873 aa19.48■□□□□ 0.71
SNX1-210ENST00000560260 AQP12AQ8IXF9 295 aa19.48■□□□□ 0.71
SNX1-210ENST00000560260 PIK3C3Q8NEB9 887 aa19.48■□□□□ 0.71
SNX1-210ENST00000560260 TAAR8Q969N4 342 aa19.48■□□□□ 0.71
SNX1-210ENST00000560260 CPNE4Q96A23 557 aaPredicted RBP19.48■□□□□ 0.71
SNX1-210ENST00000560260 TRIM15Q9C019 465 aa19.48■□□□□ 0.71
SNX1-210ENST00000560260 PAQR5Q9NXK6 330 aaPredicted RBP19.48■□□□□ 0.71
SNX1-210ENST00000560260 USP9XQ93008 2570 aaPredicted RBP19.47■□□□□ 0.71
SNX1-210ENST00000560260 MED12LQ86YW9 2145 aa19.47■□□□□ 0.71
SNX1-210ENST00000560260 A0A0G2JNJ9 132 aa19.47■□□□□ 0.71
SNX1-210ENST00000560260 TCRBV3S1A0A5B6 114 aa19.47■□□□□ 0.71
SNX1-210ENST00000560260 LRRN3E7EW58 273 aa19.47■□□□□ 0.71
SNX1-210ENST00000560260 ZG16O60844 167 aa19.47■□□□□ 0.71
SNX1-210ENST00000560260 RAMP1O60894 148 aa19.47■□□□□ 0.71
SNX1-210ENST00000560260 FZD7O75084 574 aa19.47■□□□□ 0.71
SNX1-210ENST00000560260 AHSA1O95433 338 aa19.47■□□□□ 0.71
SNX1-210ENST00000560260 LDLRP01130 860 aa19.47■□□□□ 0.71
SNX1-210ENST00000560260 FABP3P05413 133 aa19.47■□□□□ 0.71
SNX1-210ENST00000560260 THRBP10828 461 aa19.47■□□□□ 0.71
SNX1-210ENST00000560260 TIMP3P35625 211 aa19.47■□□□□ 0.71
SNX1-210ENST00000560260 MAGEA2P43356 314 aa19.47■□□□□ 0.71
SNX1-210ENST00000560260 RPS5P46782 204 aaKnown RBP19.47■□□□□ 0.71
SNX1-210ENST00000560260 OR2B6P58173 313 aa19.47■□□□□ 0.71
SNX1-210ENST00000560260 LTBQ06643 244 aa19.47■□□□□ 0.71
SNX1-210ENST00000560260 OR7A5Q15622 319 aa19.47■□□□□ 0.71
SNX1-210ENST00000560260 TMEM211Q6ICI0 200 aa19.47■□□□□ 0.71
SNX1-210ENST00000560260 P4HA3Q7Z4N8 544 aa19.47■□□□□ 0.71
SNX1-210ENST00000560260 YTHDF3Q7Z739 585 aaKnown RBP19.47■□□□□ 0.71
SNX1-210ENST00000560260 RNF128Q8TEB7 428 aa19.47■□□□□ 0.71
SNX1-210ENST00000560260 MPP4Q96JB8 637 aa19.47■□□□□ 0.71
SNX1-210ENST00000560260 IL1RAPQ9NPH3 570 aa19.47■□□□□ 0.71
SNX1-210ENST00000560260 Q9UFV3 132 aa19.47■□□□□ 0.71
SNX1-210ENST00000560260 MCTS1Q9ULC4 181 aaKnown RBP19.47■□□□□ 0.71
SNX1-210ENST00000560260 TRAPPC4Q9Y296 219 aa19.47■□□□□ 0.71
SNX1-210ENST00000560260 GCN1Q92616 2671 aaKnown RBP19.47■□□□□ 0.71
SNX1-210ENST00000560260 TRAV36DV7A0A075B6V5 113 aa19.46■□□□□ 0.71
SNX1-210ENST00000560260 KPNA4O00629 521 aaPredicted RBP19.46■□□□□ 0.71
SNX1-210ENST00000560260 PIP5K1CO60331 668 aa19.46■□□□□ 0.71
SNX1-210ENST00000560260 SYNGR4O95473 234 aa19.46■□□□□ 0.71
SNX1-210ENST00000560260 STAMBPO95630 424 aa19.46■□□□□ 0.71
SNX1-210ENST00000560260 RHCEP18577 417 aa19.46■□□□□ 0.71
SNX1-210ENST00000560260 FPR1P21462 350 aa19.46■□□□□ 0.71
SNX1-210ENST00000560260 CSNK2A1P68400 391 aaPredicted RBP19.46■□□□□ 0.71
SNX1-210ENST00000560260 ST3GAL3Q11203 375 aa19.46■□□□□ 0.71
SNX1-210ENST00000560260 FOXF2Q12947 444 aa19.46■□□□□ 0.71
SNX1-210ENST00000560260 CDSNQ15517 529 aa19.46■□□□□ 0.71
SNX1-210ENST00000560260 SPATA24Q86W54 205 aa19.46■□□□□ 0.71
SNX1-210ENST00000560260 CCDC71Q8IV32 467 aaPredicted RBP19.46■□□□□ 0.71
SNX1-210ENST00000560260 ZDHHC21Q8IVQ6 265 aa19.46■□□□□ 0.71
SNX1-210ENST00000560260 GCNT2Q8N0V5 402 aa19.46■□□□□ 0.71
SNX1-210ENST00000560260 PFN4Q8NHR9 129 aa19.46■□□□□ 0.71
SNX1-210ENST00000560260 CANT1Q8WVQ1 401 aa19.46■□□□□ 0.71
SNX1-210ENST00000560260 DHRS1Q96LJ7 313 aa19.46■□□□□ 0.71
SNX1-210ENST00000560260 PIP5K1AQ99755 562 aa19.46■□□□□ 0.71
SNX1-210ENST00000560260 FNDC11Q9BVV2 318 aa19.46■□□□□ 0.71
SNX1-210ENST00000560260 MAGIXQ9H6Y5 334 aa19.46■□□□□ 0.71
SNX1-210ENST00000560260 RNF122Q9H9V4 155 aa19.46■□□□□ 0.71
SNX1-210ENST00000560260 MEPEQ9NQ76 525 aaPredicted RBP19.46■□□□□ 0.71
SNX1-210ENST00000560260 SEC14L4Q9UDX3 406 aa19.46■□□□□ 0.71
SNX1-210ENST00000560260 RNF6Q9Y252 685 aa19.46■□□□□ 0.71
SNX1-210ENST00000560260 DIDO1Q9BTC0 2240 aaKnown RBP19.45■□□□□ 0.7
SNX1-210ENST00000560260 BGLAPP02818 100 aa19.45■□□□□ 0.7
SNX1-210ENST00000560260 AGFG1P52594 562 aaKnown RBP19.45■□□□□ 0.7
SNX1-210ENST00000560260 GUSBP1Q15486 140 aa19.45■□□□□ 0.7
SNX1-210ENST00000560260 ABLIM2Q6H8Q1 611 aa19.45■□□□□ 0.7
SNX1-210ENST00000560260 FCRLAQ7L513 359 aa19.45■□□□□ 0.7
SNX1-210ENST00000560260 PIWIL3Q7Z3Z3 882 aaKnown RBP19.45■□□□□ 0.7
SNX1-210ENST00000560260 CYP4Z1Q86W10 505 aa19.45■□□□□ 0.7
SNX1-210ENST00000560260 ABHD3Q8WU67 409 aa19.45■□□□□ 0.7
SNX1-210ENST00000560260 RND1Q92730 232 aa19.45■□□□□ 0.7
SNX1-210ENST00000560260 TM9SF2Q99805 663 aa19.45■□□□□ 0.7
SNX1-210ENST00000560260 NMNAT1Q9HAN9 279 aaPredicted RBP19.45■□□□□ 0.7
SNX1-210ENST00000560260 TIGARQ9NQ88 270 aa19.45■□□□□ 0.7
SNX1-210ENST00000560260 ING1Q9UK53 422 aaPredicted RBP19.45■□□□□ 0.7
SNX1-210ENST00000560260 CLEC4AQ9UMR7 237 aa19.45■□□□□ 0.7
SNX1-210ENST00000560260 TESMINQ9Y4I5 508 aa19.45■□□□□ 0.7
SNX1-210ENST00000560260 DHRS12A0PJE2 317 aa19.44■□□□□ 0.7
SNX1-210ENST00000560260 DNPH1O43598 174 aa19.44■□□□□ 0.7
SNX1-210ENST00000560260 AGFG2O95081 481 aa19.44■□□□□ 0.7
SNX1-210ENST00000560260 RCBTB2O95199 551 aa19.44■□□□□ 0.7
SNX1-210ENST00000560260 CBLP22681 906 aa19.44■□□□□ 0.7
SNX1-210ENST00000560260 RBM34P42696 430 aaKnown RBP19.44■□□□□ 0.7
SNX1-210ENST00000560260 P2RY4P51582 365 aa19.44■□□□□ 0.7
SNX1-210ENST00000560260 H3F3AP84243 136 aa19.44■□□□□ 0.7
SNX1-210ENST00000560260 CCNIQ14094 377 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms