RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 TRNT1Q96Q11 434 aaKnown RBP8.03□□□□□ -1.12
HDDC3-204ENST00000559834 SF3B5Q9BWJ5 86 aaKnown RBP8.03□□□□□ -1.12
HDDC3-204ENST00000559834 ROPN1BQ9BZX4 212 aaPredicted RBP8.03□□□□□ -1.12
HDDC3-204ENST00000559834 AKTIPQ9H8T0 292 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 MTHFD2LQ9H903 347 aaPredicted RBP8.03□□□□□ -1.12
HDDC3-204ENST00000559834 ROPN1Q9HAT0 212 aaPredicted RBP8.03□□□□□ -1.12
HDDC3-204ENST00000559834 TMEM45AQ9NWC5 275 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 OSGIN1Q9UJX0 560 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 FBXO9Q9UK97 447 aaPredicted RBP8.03□□□□□ -1.12
HDDC3-204ENST00000559834 FLVCR1Q9Y5Y0 555 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 FBN1P35555 2871 aaKnown RBP8.03□□□□□ -1.12
HDDC3-204ENST00000559834 STAB1Q9NY15 2570 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 LOC390937A0A1W2PQ73 354 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 TMEM72A0PK05 275 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 CFAP73A6NFT4 308 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 AGAP5A6NIR3 686 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 OR6C65A6NJZ3 312 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 ATP6V1G2-DDX39BF2Z307 99 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 FAAHO00519 579 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 BCAS1O75363 584 aaPredicted RBP8.02□□□□□ -1.13
HDDC3-204ENST00000559834 SNUPNO95149 360 aaKnown RBP8.02□□□□□ -1.13
HDDC3-204ENST00000559834 CRYAAP02489 173 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 GPIP06744 558 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 APEHP13798 732 aaKnown RBP8.02□□□□□ -1.13
HDDC3-204ENST00000559834 IL7RP16871 459 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 CDH2P19022 906 aaPredicted RBP8.02□□□□□ -1.13
HDDC3-204ENST00000559834 CXCR1P25024 350 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 TACR3P29371 465 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 ARRB2P32121 409 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 SERPINF1P36955 418 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 SLC1A3P43003 542 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 NR4A2P43354 598 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 CLNS1AP54105 237 aaKnown RBP8.02□□□□□ -1.13
HDDC3-204ENST00000559834 SNRPD2P62316 118 aaKnown RBP8.02□□□□□ -1.13
HDDC3-204ENST00000559834 GGTLC2Q14390 218 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 SQLEQ14534 574 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 CASP8Q14790 479 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 SWI5Q1ZZU3 235 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 IQCCQ4KMZ1 466 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 OTUD3Q5T2D3 398 aaPredicted RBP8.02□□□□□ -1.13
HDDC3-204ENST00000559834 SAXO2Q658L1 398 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 TMEM225Q6GV28 225 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 FRRS1Q6ZNA5 592 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 ANKRD46Q86W74 232 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 ZNF440Q8IYI8 595 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 TRIML2Q8N7C3 387 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 CNOT9Q92600 299 aaKnown RBP8.02□□□□□ -1.13
HDDC3-204ENST00000559834 TMEM45BQ96B21 275 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 TESCQ96BS2 214 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 BOD1Q96IK1 185 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 FOXN4Q96NZ1 517 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 VRK1Q99986 396 aaPredicted RBP8.02□□□□□ -1.13
HDDC3-204ENST00000559834 SLC35A5Q9BS91 424 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 TAPBPLQ9BX59 468 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 MOV10Q9HCE1 1003 aaKnown RBP8.02□□□□□ -1.13
HDDC3-204ENST00000559834 MARCOQ9UEW3 520 aaPredicted RBP8.02□□□□□ -1.13
HDDC3-204ENST00000559834 MOKQ9UQ07 419 aa8.02□□□□□ -1.13
HDDC3-204ENST00000559834 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.02□□□□□ -1.13
HDDC3-204ENST00000559834 CLDN24A6NM45 220 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 VWC2LB2RUY7 222 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 B9A039 149 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 KLF11O14901 512 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 SCN2BO60939 215 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 VAMP5O95183 116 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 TGFAP01135 160 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 DBIP07108 87 aaKnown RBP8.01□□□□□ -1.13
HDDC3-204ENST00000559834 C8BP07358 591 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 ERCC1P07992 297 aaPredicted RBP8.01□□□□□ -1.13
HDDC3-204ENST00000559834 NR2F1P10589 423 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 IMPDH2P12268 514 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 ZNF16P17020 682 aaPredicted RBP8.01□□□□□ -1.13
HDDC3-204ENST00000559834 LBPP18428 481 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 S100A3P33764 101 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 RPL14P50914 215 aaKnown RBP8.01□□□□□ -1.13
HDDC3-204ENST00000559834 UBE2NP61088 152 aaKnown RBP8.01□□□□□ -1.13
HDDC3-204ENST00000559834 LRRC74AQ0VAA2 488 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 CEACAM7Q14002 265 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 PDCD2Q16342 344 aaPredicted RBP8.01□□□□□ -1.13
HDDC3-204ENST00000559834 CARTPTQ16568 116 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 MST1LQ2TV78 715 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 KRTAP24-1Q3LI83 254 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 FAM120AOSQ5T036 256 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 LRRC74BQ6ZQY2 392 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 SLC46A3Q7Z3Q1 461 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 PEX5LQ8IYB4 626 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 LRRC34Q8IZ02 419 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 ARIH2OSQ8N7S6 290 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 TMEM99Q8N816 258 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 AURKBQ96GD4 344 aaPredicted RBP8.01□□□□□ -1.13
HDDC3-204ENST00000559834 PPP1R36Q96LQ0 422 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 ZNF317Q96PQ6 595 aaPredicted RBP8.01□□□□□ -1.13
HDDC3-204ENST00000559834 C19orf24Q9BVV8 132 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 ADAM19Q9H013 955 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 RAB1BQ9H0U4 201 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 CHODLQ9H9P2 273 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 LGALS13Q9UHV8 139 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 BTNL2Q9UIR0 455 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 DNHD1Q96M86 4753 aa8.01□□□□□ -1.13
HDDC3-204ENST00000559834 YLPM1P49750 1951 aaKnown RBP8.01□□□□□ -1.13
HDDC3-204ENST00000559834 CCDC154A6NI56 674 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms