RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 P2RY6Q15077 328 aa4.87□□□□□ -1.63
RTF1-204ENST00000558117 ZIC1Q15915 447 aa4.87□□□□□ -1.63
RTF1-204ENST00000558117 FFAR4Q5NUL3 377 aa4.87□□□□□ -1.63
RTF1-204ENST00000558117 NLRP9Q7RTR0 991 aa4.87□□□□□ -1.63
RTF1-204ENST00000558117 ZNF547Q8IVP9 402 aa4.87□□□□□ -1.63
RTF1-204ENST00000558117 NELFCDQ8IXH7 590 aa4.87□□□□□ -1.63
RTF1-204ENST00000558117 PRSS58Q8IYP2 241 aa4.87□□□□□ -1.63
RTF1-204ENST00000558117 CFAP206Q8IYR0 622 aa4.87□□□□□ -1.63
RTF1-204ENST00000558117 BANPQ8N9N5 519 aa4.87□□□□□ -1.63
RTF1-204ENST00000558117 TMEM186Q96B77 213 aa4.87□□□□□ -1.63
RTF1-204ENST00000558117 SPSB1Q96BD6 273 aa4.87□□□□□ -1.63
RTF1-204ENST00000558117 NXNL1Q96CM4 212 aa4.87□□□□□ -1.63
RTF1-204ENST00000558117 NSL1Q96IY1 281 aa4.87□□□□□ -1.63
RTF1-204ENST00000558117 USP28Q96RU2 1077 aa4.87□□□□□ -1.63
RTF1-204ENST00000558117 ASCL2Q99929 193 aa4.87□□□□□ -1.63
RTF1-204ENST00000558117 TIMM29Q9BSF4 260 aa4.87□□□□□ -1.63
RTF1-204ENST00000558117 LAT2Q9GZY6 243 aa4.87□□□□□ -1.63
RTF1-204ENST00000558117 OR2AG1Q9H205 316 aa4.87□□□□□ -1.63
RTF1-204ENST00000558117 DPH5Q9H2P9 285 aa4.87□□□□□ -1.63
RTF1-204ENST00000558117 GRIP1Q9Y3R0 1128 aa4.87□□□□□ -1.63
RTF1-204ENST00000558117 KIAA1549Q9HCM3 1950 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 SDR42E2A6NKP2 422 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 KLRC4-KLRK1H3BQV0 150 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 TRIM77I1YAP6 450 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 AP3B1O00203 1094 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 KMOO15229 486 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 NME6O75414 186 aaPredicted RBP4.86□□□□□ -1.63
RTF1-204ENST00000558117 GRAP2O75791 330 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 PTBP3O95758 552 aaKnown RBP4.86□□□□□ -1.63
RTF1-204ENST00000558117 CALCAP01258 141 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 RLN1P04808 185 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 ABHD2P08910 425 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 TCF4P15884 667 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 CA4P22748 312 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 CXCR2P25025 360 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 FRKP42685 505 aaPredicted RBP4.86□□□□□ -1.63
RTF1-204ENST00000558117 NKX2-1P43699 371 aaPredicted RBP4.86□□□□□ -1.63
RTF1-204ENST00000558117 OR1D4P47884 311 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 UCP2P55851 309 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 TRA2BP62995 288 aaKnown RBP4.86□□□□□ -1.63
RTF1-204ENST00000558117 MRPL28Q13084 256 aaKnown RBP4.86□□□□□ -1.63
RTF1-204ENST00000558117 ITGA9Q13797 1035 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 GTDC1Q4AE62 458 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 C14orf177Q52M58 125 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 KLHL26Q53HC5 615 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 TMEM182Q6ZP80 229 aaPredicted RBP4.86□□□□□ -1.63
RTF1-204ENST00000558117 RBM43Q6ZSC3 357 aaKnown RBP4.86□□□□□ -1.63
RTF1-204ENST00000558117 SLC16A9Q7RTY1 509 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 TMEM139Q8IV31 216 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 ZNF611Q8N823 705 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 PPFIBP2Q8ND30 876 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 KBTBD8Q8NFY9 601 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 OR52E1Q8NGJ3 308 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 SLC5A11Q8WWX8 675 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 SPATA13Q96N96 652 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 WFIKKN1Q96NZ8 548 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 MCCC1Q96RQ3 725 aaPredicted RBP4.86□□□□□ -1.63
RTF1-204ENST00000558117 PANK2Q9BZ23 570 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 CHRNA10Q9GZZ6 450 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 P2RY12Q9H244 342 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 TRIM45Q9H8W5 580 aaPredicted RBP4.86□□□□□ -1.63
RTF1-204ENST00000558117 ZDHHC11Q9H8X9 412 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 Q9N2K0 584 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 SH2D2AQ9NP31 389 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 SDR39U1Q9NRG7 319 aaPredicted RBP4.86□□□□□ -1.63
RTF1-204ENST00000558117 SERINC1Q9NRX5 453 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 INTS9Q9NV88 658 aaKnown RBP4.86□□□□□ -1.63
RTF1-204ENST00000558117 SLC24A2Q9UI40 661 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 NEU3Q9UQ49 428 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 STRAPQ9Y3F4 350 aaKnown RBP4.86□□□□□ -1.63
RTF1-204ENST00000558117 ATP6V1DQ9Y5K8 247 aa4.86□□□□□ -1.63
RTF1-204ENST00000558117 IGLV3-12A0A075B6K2 115 aa4.85□□□□□ -1.63
RTF1-204ENST00000558117 IGKV3D-15A0A087WSY6 115 aa4.85□□□□□ -1.63
RTF1-204ENST00000558117 A0A087X002 238 aa4.85□□□□□ -1.63
RTF1-204ENST00000558117 A0A0A6YYC8 382 aaPredicted RBP4.85□□□□□ -1.63
RTF1-204ENST00000558117 IGHV4-61A0A0C4DH41 118 aa4.85□□□□□ -1.63
RTF1-204ENST00000558117 LCE6AA0A183 80 aa4.85□□□□□ -1.63
RTF1-204ENST00000558117 C5orf51A6NDU8 294 aa4.85□□□□□ -1.63
RTF1-204ENST00000558117 GOLGA6L4A6NEF3 574 aa4.85□□□□□ -1.63
RTF1-204ENST00000558117 EEF1E1-BLOC1S5C9J1V9 151 aa4.85□□□□□ -1.63
RTF1-204ENST00000558117 I3L1I5 382 aaPredicted RBP4.85□□□□□ -1.63
RTF1-204ENST00000558117 UBXN8O00124 270 aa4.85□□□□□ -1.63
RTF1-204ENST00000558117 BTN3A3O00478 584 aa4.85□□□□□ -1.63
RTF1-204ENST00000558117 NR5A2O00482 541 aa4.85□□□□□ -1.63
RTF1-204ENST00000558117 ATP6V0E1O15342 81 aa4.85□□□□□ -1.63
RTF1-204ENST00000558117 EEF1E1O43324 174 aaKnown RBP4.85□□□□□ -1.63
RTF1-204ENST00000558117 SELENOFO60613 162 aa4.85□□□□□ -1.63
RTF1-204ENST00000558117 TRMUO75648 421 aaKnown RBP4.85□□□□□ -1.63
RTF1-204ENST00000558117 CLPTM1O96005 669 aa4.85□□□□□ -1.63
RTF1-204ENST00000558117 IGHV4-59P01825 116 aa4.85□□□□□ -1.63
RTF1-204ENST00000558117 IGHG3P01860 377 aa4.85□□□□□ -1.63
RTF1-204ENST00000558117 PAEPP09466 180 aa4.85□□□□□ -1.63
RTF1-204ENST00000558117 DANCRP0C864 163 aa4.85□□□□□ -1.63
RTF1-204ENST00000558117 SMIM18P0DKX4 95 aa4.85□□□□□ -1.63
RTF1-204ENST00000558117 C8orf89P0DMQ9 161 aa4.85□□□□□ -1.63
RTF1-204ENST00000558117 GABRA1P14867 456 aa4.85□□□□□ -1.63
RTF1-204ENST00000558117 EFNA1P20827 205 aaPredicted RBP4.85□□□□□ -1.63
RTF1-204ENST00000558117 SLC6A6P31641 620 aa4.85□□□□□ -1.63
RTF1-204ENST00000558117 SRP14P37108 136 aaKnown RBP4.85□□□□□ -1.63
RTF1-204ENST00000558117 SLC9A3P48764 834 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms