RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 A0A0G2JPF8 293 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 ZNF724A8MTY0 619 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 DEFB108AA8MXU0 73 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 HMGB1P1B2RPK0 211 aaPredicted RBP6.51□□□□□ -1.37
SCFD1-222ENST00000556768 HNRNPCL2B2RXH8 293 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 HNRNPCL3B7ZW38 293 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 CYTIPO60759 359 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 HNRNPCL1O60812 293 aaKnown RBP6.51□□□□□ -1.37
SCFD1-222ENST00000556768 CNOT4O95628 575 aaKnown RBP6.51□□□□□ -1.37
SCFD1-222ENST00000556768 SCG5P05408 212 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 HNRNPCL4P0DMR1 293 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 NCF2P19878 526 aaPredicted RBP6.51□□□□□ -1.37
SCFD1-222ENST00000556768 PPIBP23284 216 aaKnown RBP6.51□□□□□ -1.37
SCFD1-222ENST00000556768 SHC1P29353 583 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 IL12AP29459 219 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 CDKN2CP42773 168 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 POLR2HP52434 150 aaKnown RBP6.51□□□□□ -1.37
SCFD1-222ENST00000556768 DSTNP60981 165 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 NKX6-1P78426 367 aaPredicted RBP6.51□□□□□ -1.37
SCFD1-222ENST00000556768 LIN52Q52LA3 116 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 SFRP5Q5T4F7 317 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 SHEQ5VZ18 495 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 EPGNQ6UW88 154 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 Q6ZT83 130 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 C8orf86Q6ZUL3 223 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 OLIG3Q7RTU3 272 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 CXorf67Q86X51 503 aaPredicted RBP6.51□□□□□ -1.37
SCFD1-222ENST00000556768 ANKFN1Q8N957 763 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 FAM71CQ8NEG0 241 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 OR52P1PQ8NH57 321 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 PIGXQ8TBF5 258 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 MARK4Q96L34 752 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 OR52B2Q96RD2 323 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 PIP5K1AQ99755 562 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 KLHDC3Q9BQ90 382 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 NAA11Q9BSU3 229 aaPredicted RBP6.51□□□□□ -1.37
SCFD1-222ENST00000556768 CCDC106Q9BWC9 280 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 TMPRSS13Q9BYE2 586 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 SLC38A1Q9H2H9 487 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 CXorf56Q9H5V9 222 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 CTPS2Q9NRF8 586 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 INTS9Q9NV88 658 aaKnown RBP6.51□□□□□ -1.37
SCFD1-222ENST00000556768 TMEM181Q9P2C4 612 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 TRAPPC4Q9Y296 219 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 NOSIPQ9Y314 301 aaKnown RBP6.51□□□□□ -1.37
SCFD1-222ENST00000556768 NCKAP5O14513 1909 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 HCFC1P51610 2035 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 FREM3P0C091 2139 aa6.51□□□□□ -1.37
SCFD1-222ENST00000556768 TMED7-TICAM2A0A0A6YYA0 188 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.5□□□□□ -1.37
SCFD1-222ENST00000556768 CLDN24A6NM45 220 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 EVPLLA8MZ36 301 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 CLIC1O00299 241 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 ZNF208O43345 1280 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 MRPL33O75394 65 aaKnown RBP6.5□□□□□ -1.37
SCFD1-222ENST00000556768 PMS2P2O95744 297 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 ADAP00813 363 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 CHRM4P08173 479 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 FOSL1P15407 271 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 CD53P19397 219 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 CCNA2P20248 432 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 CCKARP32238 428 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 OR2B6P58173 313 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 ADAM8P78325 824 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 SLC35A1P78382 337 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 FADDQ13158 208 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 PDK3Q15120 406 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 STK11Q15831 433 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 MRPL2Q5T653 305 aaKnown RBP6.5□□□□□ -1.37
SCFD1-222ENST00000556768 TFAP2EQ6VUC0 442 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 NUFIP2Q7Z417 695 aaKnown RBP6.5□□□□□ -1.37
SCFD1-222ENST00000556768 HMGN2P46Q86SG4 172 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 P2RY8Q86VZ1 359 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 KRT73Q86Y46 540 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 GABRG1Q8N1C3 465 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 SLC38A5Q8WUX1 472 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 CNOT9Q92600 299 aaKnown RBP6.5□□□□□ -1.37
SCFD1-222ENST00000556768 VPS33AQ96AX1 596 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 APH1AQ96BI3 265 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 S100PBPQ96BU1 408 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 ZNF775Q96BV0 537 aaPredicted RBP6.5□□□□□ -1.37
SCFD1-222ENST00000556768 PSD2Q9BQI7 771 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 COQ10BQ9H8M1 238 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 TMEM45AQ9NWC5 275 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 CORO2BQ9UQ03 480 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 TMED7Q9Y3B3 224 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 CENPVL1A0A0U1RR11 272 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 CIB4A0PJX0 185 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 CCT8L1PA6NM43 557 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 FAM171A2A8MVW0 826 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 M0R082 166 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 FAAHO00519 579 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 SMAD9O15198 467 aaKnown RBP6.5□□□□□ -1.37
SCFD1-222ENST00000556768 BCHEP06276 602 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 GPIP06744 558 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 TFPTP0C1Z6 253 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 ETFAP13804 333 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 GGT1P19440 569 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 TACR3P29371 465 aa6.5□□□□□ -1.37
SCFD1-222ENST00000556768 ADSLP30566 484 aaPredicted RBP6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms