RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 RBMY1CP0DJD4 496 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 POU2F1P14859 743 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 FUT3P21217 361 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 MDKP21741 143 aaPredicted RBP1.92□□□□□ -2.1
SCFD1-218ENST00000556256 HTR1FP30939 366 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 UGT1A5P35504 534 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 DDOSTP39656 456 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 QARSP47897 775 aaKnown RBP1.92□□□□□ -2.1
SCFD1-218ENST00000556256 DUSP3P51452 185 aaPredicted RBP1.92□□□□□ -2.1
SCFD1-218ENST00000556256 WNT4P56705 351 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 ACTR1AP61163 376 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 TNFRSF17Q02223 184 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 TLE4Q04727 773 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 PSG7Q13046 419 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 DAZ2Q13117 558 aaKnown RBP1.92□□□□□ -2.1
SCFD1-218ENST00000556256 VGLL4Q14135 290 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 ARL6IP1Q15041 203 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 DPYSL2Q16555 572 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 EXOC3L2Q2M3D2 409 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 ATL3Q6DD88 541 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 OR4F3Q6IEY1 312 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 Q6P435 159 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 RFLNAQ6ZTI6 216 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 GDPD3Q7L5L3 318 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 SLC35F2Q8IXU6 374 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 ZNF100Q8IYN0 542 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 ZNF679Q8IYX0 411 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 RDH10Q8IZV5 341 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 LRRC75A-AS1Q8N1F1 130 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 C6orf223Q8N319 242 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 ZCCHC7Q8N3Z6 543 aaKnown RBP1.92□□□□□ -2.1
SCFD1-218ENST00000556256 MFSD9Q8NBP5 474 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 OR5D13Q8NGL4 314 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 FBXO30Q8TB52 745 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 DNAJA4Q8WW22 397 aaPredicted RBP1.92□□□□□ -2.1
SCFD1-218ENST00000556256 ST8SIA1Q92185 356 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 TMEM101Q96IK0 257 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 RAB34Q9BZG1 259 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 SELENOIQ9C0D9 397 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 C20orf85Q9H1P6 137 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 SUDS3Q9H7L9 328 aaPredicted RBP1.92□□□□□ -2.1
SCFD1-218ENST00000556256 DAZ3Q9NR90 486 aaKnown RBP1.92□□□□□ -2.1
SCFD1-218ENST00000556256 PRPF19Q9UMS4 504 aaKnown RBP1.92□□□□□ -2.1
SCFD1-218ENST00000556256 IFT52Q9Y366 437 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 CDH10Q9Y6N8 788 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 ATP10AO60312 1499 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 NACAE9PAV3 2078 aa1.92□□□□□ -2.1
SCFD1-218ENST00000556256 THSD7BQ9C0I4 1608 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 LRRK1Q38SD2 2015 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 ATAD2BQ9ULI0 1458 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 PLEKHG1Q9ULL1 1385 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 NBR2O15453 112 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 MTX2O75431 263 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 BBOX1O75936 387 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 SCGNO76038 276 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 SUPT7LO94864 414 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 AP2A1O95782 977 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 ACTL6AO96019 429 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 HPNP05981 417 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 GABRR1P24046 479 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 GCAP28676 217 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 CALCRP30988 508 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 RFC4P35249 363 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 CTRLP40313 264 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 RPL13AP40429 203 aaKnown RBP1.91□□□□□ -2.1
SCFD1-218ENST00000556256 OPRD1P41143 372 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 PRPHP41219 470 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 KIR2DS4P43632 304 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 CCT3P49368 545 aaKnown RBP1.91□□□□□ -2.1
SCFD1-218ENST00000556256 KLK7P49862 253 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 CAV2P51636 162 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 APOC4P55056 127 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 NUP107P57740 925 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 ASPHQ12797 758 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 ORC2Q13416 577 aaPredicted RBP1.91□□□□□ -2.1
SCFD1-218ENST00000556256 LRRC23Q53EV4 343 aaPredicted RBP1.91□□□□□ -2.1
SCFD1-218ENST00000556256 C1orf100Q5SVJ3 147 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 PDZK1Q5T2W1 519 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 C1orf146Q5VVC0 180 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 CENPPQ6IPU0 288 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 CASC1Q6TDU7 716 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 Q8N9L7 120 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 TRPV1Q8NER1 839 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 OR10G3Q8NGC4 313 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 OR51S1Q8NGJ8 323 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 BRSK1Q8TDC3 778 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 RNF138Q8WVD3 245 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 RAPGEF5Q92565 580 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 UBE2E3Q969T4 207 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 MARC2Q969Z3 335 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 PAGE5Q96GU1 130 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 SEC22AQ96IW7 307 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 OXGR1Q96P68 337 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 SLC38A2Q96QD8 506 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 SECISBP2Q96T21 854 aaKnown RBP1.91□□□□□ -2.1
SCFD1-218ENST00000556256 HIST1H4GQ99525 98 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 NPAS2Q99743 824 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 TMEM43Q9BTV4 400 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 CAPS2Q9BXY5 557 aa1.91□□□□□ -2.1
SCFD1-218ENST00000556256 VCX2Q9H322 139 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms