RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 A0A1B0GX12 115 aa12.81□□□□□ -0.36
CCDC88C-207ENST00000554051 LIPT2A6NK58 231 aa12.81□□□□□ -0.36
CCDC88C-207ENST00000554051 C16orf97H3BN30 126 aa12.81□□□□□ -0.36
CCDC88C-207ENST00000554051 FRS3O43559 492 aa12.81□□□□□ -0.36
CCDC88C-207ENST00000554051 VAMP5O95183 116 aa12.81□□□□□ -0.36
CCDC88C-207ENST00000554051 PRG2P13727 222 aa12.81□□□□□ -0.36
CCDC88C-207ENST00000554051 CCNA2P20248 432 aa12.81□□□□□ -0.36
CCDC88C-207ENST00000554051 GYS2P54840 703 aa12.81□□□□□ -0.36
CCDC88C-207ENST00000554051 C1orf140Q5VVS0 124 aa12.81□□□□□ -0.36
CCDC88C-207ENST00000554051 GALNT5Q7Z7M9 940 aa12.81□□□□□ -0.36
CCDC88C-207ENST00000554051 TREML1Q86YW5 311 aa12.81□□□□□ -0.36
CCDC88C-207ENST00000554051 MICU2Q8IYU8 434 aa12.81□□□□□ -0.36
CCDC88C-207ENST00000554051 OR6S1Q8NH40 331 aa12.81□□□□□ -0.36
CCDC88C-207ENST00000554051 TAMM41Q96BW9 452 aa12.81□□□□□ -0.36
CCDC88C-207ENST00000554051 ZNF583Q96ND8 569 aa12.81□□□□□ -0.36
CCDC88C-207ENST00000554051 PCDHAC1Q9H158 963 aa12.81□□□□□ -0.36
CCDC88C-207ENST00000554051 OPN3Q9H1Y3 402 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-207ENST00000554051 MCCC2Q9HCC0 563 aa12.81□□□□□ -0.36
CCDC88C-207ENST00000554051 ABCD2Q9UBJ2 740 aa12.81□□□□□ -0.36
CCDC88C-207ENST00000554051 SETXQ7Z333 2677 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 AQP7P3A6NL99 342 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 CHP2O43745 196 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 TPST1O60507 370 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 SHOX2O60902 331 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 FZD7O75084 574 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 NPIPB7O75200 414 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 OPN1SWP03999 348 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 CD247P20963 164 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 HTR2AP28223 471 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 IFNA8P32881 189 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 UGT2B10P36537 528 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 SLC7A2P52569 658 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 H3F3AP84243 136 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 TLE4Q04727 773 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 P2RY6Q15077 328 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 SPATS1Q496A3 300 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 FAM69AQ5T7M9 428 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 C8orf82Q6P1X6 216 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 ZNF474Q6S9Z5 364 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 TFAP2EQ6VUC0 442 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 TUSC5Q8IXB3 177 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 SLC15A3Q8IY34 581 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 SMYD1Q8NB12 490 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 MFSD8Q8NHS3 518 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 MPP4Q96JB8 637 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 MCHR1Q99705 422 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 TMEM43Q9BTV4 400 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 HDHD5Q9BXW7 423 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 PARPBPQ9NWS1 579 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 ADPRHL2Q9NX46 363 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 ZNF226Q9NYT6 803 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 TAGLN3Q9UI15 199 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 CLEC4AQ9UMR7 237 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 EDARQ9UNE0 448 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 GPR52Q9Y2T5 361 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 TESMINQ9Y4I5 508 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 CORINQ9Y5Q5 1042 aa12.8□□□□□ -0.36
CCDC88C-207ENST00000554051 PKDREJQ9NTG1 2253 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 TRAV36DV7A0A075B6V5 113 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 A0A087WUJ7 227 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 IGHV3-15A0A0B4J1V0 119 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 SH3D21A4FU49 640 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 M0R3H8 397 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 GMNNO75496 209 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 EPXP11678 715 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 IMPDH2P12268 514 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 PSMB1P20618 241 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 FPR1P21462 350 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 KDELR2P33947 212 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 OR3A2P47893 321 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 LIPEQ05469 1076 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 DAZAP2Q15038 168 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 OR1Q1Q15612 314 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 OR7A5Q15622 319 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 DUSP7Q16829 419 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 GLIPR1L2Q4G1C9 344 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 LRRC23Q53EV4 343 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 OTUD3Q5T2D3 398 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 C1QTNF12Q5T7M4 302 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 ZNF295-AS1Q8N0V1 137 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 ZNF610Q8N9Z0 462 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 ADPRHL1Q8NDY3 354 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 GPR32P1Q8NGA4 272 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 APH1AQ96BI3 265 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 CCT8L2Q96SF2 557 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 SLC19A3Q9BZV2 496 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 CRIM1Q9NZV1 1036 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 RASD1Q9Y272 281 aa12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 NOSIPQ9Y314 301 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-207ENST00000554051 ZC3H12DA2A288 527 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 TRAPPC13A5PLN9 417 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 OR6C65A6NJZ3 312 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 A6NNC1 897 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 ZNF716A6NP11 495 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 CASKO14936 926 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 GSTA4O15217 222 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 AKAP8O43823 692 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 GCM2O75603 506 aaPredicted RBP12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 THRBP10828 461 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 PSME3P61289 254 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms