RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 ZHX1-C8orf76Q96EF9 292 aa11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 TEX12Q9BXU0 123 aa11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 TTTY10Q9BZA0 68 aa11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 DCSTAMPQ9H295 470 aa11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 EVA1AQ9H8M9 152 aa11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 EXOSC3Q9NQT5 275 aaKnown RBP11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 H2AFY2Q9P0M6 372 aaPredicted RBP11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 EP300Q09472 2414 aaPredicted RBP11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 OR2J2O76002 312 aa11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 OR7A10O76100 309 aa11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 HTR1FP30939 366 aa11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 ATP6V1E1P36543 226 aa11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 RPL4P36578 427 aaKnown RBP11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 AQP2P41181 271 aa11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 INPP5JQ15735 1006 aaPredicted RBP11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 ZSWIM7Q19AV6 140 aa11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 ANKDD1AQ495B1 522 aa11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 KLHL22Q53GT1 634 aa11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 RTL4Q6ZR62 310 aa11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 SLC26A1Q9H2B4 701 aa11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 FGF20Q9NP95 211 aaPredicted RBP11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 OSGIN1Q9UJX0 560 aa11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 PCDHGA3Q9Y5H0 932 aa11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 ZNF318Q5VUA4 2279 aa11.6□□□□□ -0.55
VIPAS39-206ENST00000553888 CCDC182A6NF36 153 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 SHISA8B8ZZ34 492 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 J3QRK9 145 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 CCRL2O00421 344 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 PPM1BO75688 479 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 KLF7O75840 302 aaPredicted RBP11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 CLPXO76031 633 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 ONECUT2O95948 504 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 F13BP05160 661 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 SCG5P05408 212 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 MYL12AP19105 171 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 SLC1A3P43003 542 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 NRG3P56975 720 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 TRA2AQ13595 282 aaKnown RBP eCLIP11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 PROKR2Q8NFJ6 384 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 TAAR8Q969N4 342 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 SECISBP2Q96T21 854 aaKnown RBP11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 ZNF649Q9BS31 505 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 RACGAP1Q9H0H5 632 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 EXOSC4Q9NPD3 245 aaKnown RBP11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 TIMMDC1Q9NPL8 285 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 MED17Q9NVC6 651 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 MRPS18AQ9NVS2 196 aaKnown RBP11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 CHRNA9Q9UGM1 479 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 GPN3Q9UHW5 284 aaPredicted RBP11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 ZNF346Q9UL40 294 aaKnown RBP11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 CORINQ9Y5Q5 1042 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 OR6C70A6NIJ9 312 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 PRR23D1E9PI22 279 aaPredicted RBP11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 KLK3P07288 261 aaPredicted RBP11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 PRR23D2P0DMB1 279 aaPredicted RBP11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 SLC6A6P31641 620 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 OPRL1P41146 370 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 HCCSP53701 268 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 ZNF74Q16587 644 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 COL28A1Q2UY09 1125 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 BTBD16Q32M84 506 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 C3orf38Q5JPI3 329 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 LYPD4Q6UWN0 246 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 RFLNBQ8N5W9 214 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 ISG20L2Q9H9L3 353 aaKnown RBP11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 TOR4AQ9NXH8 423 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 SPIN1Q9Y657 262 aaPredicted RBP11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 RIIAD1A6NNX1 92 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 FLRT2O43155 660 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 NDUFB2O95178 105 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 FREM3P0C091 2139 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 BMXP51813 675 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 PCOLCEQ15113 449 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 QPRTQ15274 297 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 RPL13AP3Q6NVV1 102 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 NCCRP1Q6ZVX7 275 aaPredicted RBP11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 MEPCEQ7L2J0 689 aaKnown RBP11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 BTLAQ7Z6A9 289 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 FAM98AQ8NCA5 519 aaKnown RBP11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 C17orf47Q8NEP4 570 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 OR10G3Q8NGC4 313 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 RFKQ969G6 155 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 NMNAT3Q96T66 252 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 KATNB1Q9BVA0 655 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 OR11A1Q9GZK7 315 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 ADAM19Q9H013 955 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 MMP25Q9NPA2 562 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 FBXO8Q9NRD0 319 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 PLSCR2Q9NRY7 297 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 MED11Q9P086 117 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 LOXL2Q9Y4K0 774 aa11.59□□□□□ -0.55
VIPAS39-206ENST00000553888 A0A1W2PNU3 283 aaPredicted RBP11.58□□□□□ -0.56
VIPAS39-206ENST00000553888 A0A1W2PQD3 144 aa11.58□□□□□ -0.56
VIPAS39-206ENST00000553888 GP1BAP07359 652 aa11.58□□□□□ -0.56
VIPAS39-206ENST00000553888 INHBBP09529 407 aa11.58□□□□□ -0.56
VIPAS39-206ENST00000553888 PEPDP12955 493 aa11.58□□□□□ -0.56
VIPAS39-206ENST00000553888 PHC2Q8IXK0 858 aa11.58□□□□□ -0.56
VIPAS39-206ENST00000553888 SLC15A4Q8N697 577 aa11.58□□□□□ -0.56
VIPAS39-206ENST00000553888 OR5W2Q8NH69 310 aa11.58□□□□□ -0.56
VIPAS39-206ENST00000553888 NANSQ9NR45 359 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms