RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 ACOD1A6NK06 481 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 TEX46H3BTG2 121 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 M0R233 179 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 PSMD9O00233 223 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 PRAF2O60831 178 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 ITGA10O75578 1167 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 ARL6IP5O75915 188 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 EML2O95834 649 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 TGM6O95932 706 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 NAGAP17050 411 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 PLA2G7Q13093 441 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 BAMBIQ13145 260 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 IRF4Q15306 451 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 RPE65Q16518 533 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 EIPR1Q53HC9 387 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 NHLRC3Q5JS37 347 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 FAM69AQ5T7M9 428 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 TBC1D3GQ6DHY5 549 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 NHLRC1Q6VVB1 395 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 LINGO2Q7L985 606 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 RANBP3LQ86VV4 465 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-212ENST00000552491 LRRC25Q8N386 305 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-212ENST00000552491 MFSD9Q8NBP5 474 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 UXS1Q8NBZ7 420 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 SRFBP1Q8NEF9 429 aaKnown RBP4.99□□□□□ -1.61
LIMA1-212ENST00000552491 SDR9C7Q8NEX9 313 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 OR4K13Q8NH42 304 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 ZCCHC10Q8TBK6 192 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 SLC2A12Q8TD20 617 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 SMIM19Q96E16 107 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 CXorf58Q96LI9 332 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 CMTM3Q96MX0 182 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 PTCHD1Q96NR3 888 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 TEX101Q9BY14 249 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 B3GNT4Q9C0J1 378 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 MS4A7Q9GZW8 240 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-212ENST00000552491 MCCC2Q9HCC0 563 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 NOX4Q9NPH5 578 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 PRSS16Q9NQE7 514 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 NANSQ9NR45 359 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 HAO2Q9NYQ3 351 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 RDH8Q9NYR8 311 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 RABL2AQ9UBK7 228 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-212ENST00000552491 RABL2BQ9UNT1 228 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 PCDHGA5Q9Y5G8 931 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 ARHGEF17Q96PE2 2063 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-212ENST00000552491 CACNA1IQ9P0X4 2223 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 RANBP2P49792 3224 aaKnown RBP4.98□□□□□ -1.61
LIMA1-212ENST00000552491 TBC1D3EA0A087X179 549 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 ABHD14A-ACY1A0A1B0GW23 586 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 GXYLT2A0PJZ3 443 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 ANKRD61A6NGH8 418 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 ZNF860A6NHJ4 632 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 PRR19A6NJB7 356 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 POM121CA8CG34 1229 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 P2RX6O15547 441 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 LDB3O75112 727 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 SNAPC5O75971 98 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 ATP1B1P05026 303 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 CEACAM5P06731 702 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 PROS1P07225 676 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 THBS1P07996 1170 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 CLTBP09497 229 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 TMIGD3P0DMS9 266 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-212ENST00000552491 NID1P14543 1247 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 HIST1H1CP16403 213 aaKnown RBP4.98□□□□□ -1.61
LIMA1-212ENST00000552491 ANXA7P20073 488 aaKnown RBP4.98□□□□□ -1.61
LIMA1-212ENST00000552491 PSMB1P20618 241 aaKnown RBP4.98□□□□□ -1.61
LIMA1-212ENST00000552491 C4BPBP20851 252 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 DPP4P27487 766 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 DCTDP32321 178 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 PTGS2P35354 604 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 WASP42768 502 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 PTH2RP49190 550 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 NANOS3P60323 173 aaKnown RBP4.98□□□□□ -1.61
LIMA1-212ENST00000552491 ACTC1P68032 377 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 ACTA1P68133 377 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 SIRPAP78324 504 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 C2orf68Q2NKX9 166 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 TUSC1Q2TAM9 212 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 LINC00303Q3SY05 128 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 AMZ1Q400G9 498 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 GXYLT1Q4G148 440 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 DEFB134Q4QY38 66 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 DCST2Q5T1A1 773 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 FHL5Q5TD97 284 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 AGBL4Q5VU57 503 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 OR5M10Q6IEU7 315 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 SLC25A25Q6KCM7 469 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 TMEM81Q6P7N7 255 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 ZC3H14Q6PJT7 736 aaKnown RBP4.98□□□□□ -1.61
LIMA1-212ENST00000552491 APOOLQ6UXV4 268 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 FCRLAQ7L513 359 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 OVCH1Q7RTY7 1134 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 KCTD20Q7Z5Y7 419 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 SLITRK4Q8IW52 837 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 CDK20Q8IZL9 346 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 ZNF619Q8N2I2 560 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 ZBTB44Q8NCP5 570 aa4.98□□□□□ -1.61
LIMA1-212ENST00000552491 TMEM52Q8NDY8 209 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms