RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 PDXKO00764 312 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 KLF11O14901 512 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 ARPC1BO15143 372 aaKnown RBP3.27□□□□□ -1.89
LIMA1-208ENST00000551691 CTAG2O75638 210 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 ANXA9O76027 345 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 F10P00742 488 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 SLC2A2P11168 524 aaPredicted RBP3.27□□□□□ -1.89
LIMA1-208ENST00000551691 CCNB1P14635 433 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 FOLR1P15328 257 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 RPL35AP18077 110 aaKnown RBP3.27□□□□□ -1.89
LIMA1-208ENST00000551691 DPP4P27487 766 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 OTX2P32243 289 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 GNPDA1P46926 289 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 BRWD1-AS2P59051 145 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 B3GALT5-AS1P59052 145 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 HERVK_113P63132 956 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 ERVK-8P63133 956 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 SRYQ05066 204 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 GPR50Q13585 617 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 CLPPQ16740 277 aaPredicted RBP3.27□□□□□ -1.89
LIMA1-208ENST00000551691 DEFB113Q30KQ7 82 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 ZNF699Q32M78 642 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 SLC25A53Q5H9E4 307 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 ZNF311Q5JNZ3 666 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 LEKR1Q6ZMV7 388 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 Q6ZRG5 221 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 CENPUQ71F23 418 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 GOLGA7Q7Z5G4 137 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 FAM131BQ86XD5 332 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 WDR49Q8IV35 697 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 KIRREL3Q8IZU9 778 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 CENPSQ8N2Z9 138 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 ARHGAP18Q8N392 663 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 PARP8Q8N3A8 854 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 RAB42Q8N4Z0 105 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 TEX26Q8N6G2 289 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 IQCF1Q8N6M8 205 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 MINDY2Q8NBR6 621 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 OR56A4Q8NGH8 313 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 PNPT1Q8TCS8 783 aaKnown RBP3.27□□□□□ -1.89
LIMA1-208ENST00000551691 SMPDL3AQ92484 453 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 NEUROG1Q92886 237 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 MRPL53Q96EL3 112 aaKnown RBP3.27□□□□□ -1.89
LIMA1-208ENST00000551691 TGM7Q96PF1 710 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 DUX5Q96PT3 197 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 CCM2Q9BSQ5 444 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 ALG12Q9BV10 488 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 C19orf24Q9BVV8 132 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 ERVK-6Q9BXR3 956 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 EGLN1Q9GZT9 426 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 VCX2Q9H322 139 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 GORASP2Q9H8Y8 452 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 FANCFQ9NPI8 374 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 NMRK1Q9NWW6 199 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 DIMT1Q9UNQ2 313 aaKnown RBP3.27□□□□□ -1.89
LIMA1-208ENST00000551691 SLC9A8Q9Y2E8 581 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 SPACA6W5XKT8 324 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 HCFC1P51610 2035 aa3.27□□□□□ -1.89
LIMA1-208ENST00000551691 SPTBP11277 2137 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 A0A0U1RQV5 110 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 IQCMA0A1B0GVH7 501 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 ATP6AP2A0A1C7CYW4 349 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 CTAGE15A4D2H0 777 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 PCP4L1A6NKN8 68 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 XPO1O14980 1071 aaKnown RBP3.26□□□□□ -1.89
LIMA1-208ENST00000551691 BUB1O43683 1085 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 KIAA0513O60268 411 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 CIDEAO60543 219 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 CIB2O75838 187 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 KRT33AO76009 404 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 CD160O95971 181 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 TOMM40O96008 361 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 CAPN1P07384 714 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 ANXA4P09525 319 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-208ENST00000551691 GSTT2P0CG29 244 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 GSTT2BP0CG30 244 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 CTAGE8P0CG41 777 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 IGHV4-38-2P0DP08 117 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 CLUP10909 449 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 GP9P14770 177 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 ZNF12P17014 697 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 TSPAN8P19075 237 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 HTR2AP28223 471 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 FCGR2BP31994 310 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-208ENST00000551691 ADRA1AP35348 466 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 CHI3L1P36222 383 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-208ENST00000551691 CDKN2AP42771 156 aaKnown RBP3.26□□□□□ -1.89
LIMA1-208ENST00000551691 PTGFRP43088 359 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 NR4A2P43354 598 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 TSFMP43897 325 aaKnown RBP3.26□□□□□ -1.89
LIMA1-208ENST00000551691 NPY2RP49146 381 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 CCNHP51946 323 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-208ENST00000551691 DLX5P56178 289 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 PPP1CAP62136 330 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 DEFA6Q01524 100 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 TFF3Q07654 80 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 CYP24A1Q07973 514 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 ADIGQ0VDE8 80 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 RFTN1Q14699 578 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-208ENST00000551691 OR1C1Q15619 314 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms