RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 UQCRC2P22695 453 aa13.48□□□□□ -0.25
CLSTN3-213ENST00000541953 APOBEC3AP31941 199 aaPredicted RBP13.48□□□□□ -0.25
CLSTN3-213ENST00000541953 CDKN2CP42773 168 aa13.48□□□□□ -0.25
CLSTN3-213ENST00000541953 NR4A2P43354 598 aa13.48□□□□□ -0.25
CLSTN3-213ENST00000541953 P2RY4P51582 365 aa13.48□□□□□ -0.25
CLSTN3-213ENST00000541953 CASP8Q14790 479 aa13.48□□□□□ -0.25
CLSTN3-213ENST00000541953 GPAT3Q53EU6 434 aa13.48□□□□□ -0.25
CLSTN3-213ENST00000541953 COX20Q5RI15 118 aa13.48□□□□□ -0.25
CLSTN3-213ENST00000541953 RNF130Q86XS8 419 aa13.48□□□□□ -0.25
CLSTN3-213ENST00000541953 C1orf162Q8NEQ5 155 aaPredicted RBP13.48□□□□□ -0.25
CLSTN3-213ENST00000541953 UPB1Q9UBR1 384 aa13.48□□□□□ -0.25
CLSTN3-213ENST00000541953 MARCOQ9UEW3 520 aaPredicted RBP13.48□□□□□ -0.25
CLSTN3-213ENST00000541953 TRAPPC4Q9Y296 219 aa13.48□□□□□ -0.25
CLSTN3-213ENST00000541953 SLC9A8Q9Y2E8 581 aa13.48□□□□□ -0.25
CLSTN3-213ENST00000541953 AMDHD2Q9Y303 409 aa13.48□□□□□ -0.25
CLSTN3-213ENST00000541953 WDR91A4D1P6 747 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 NR5A2O00482 541 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 LGI1O95970 557 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 GUSBP08236 651 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 SRD5A1P18405 259 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 RPS4Y1P22090 263 aaKnown RBP13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 MPGP29372 298 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 SERPINB5P36952 375 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 KHKP50053 298 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 POLR2HP52434 150 aaKnown RBP13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 NME5P56597 212 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 BNIP2Q12982 314 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 OTUD3Q5T2D3 398 aaPredicted RBP13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 ATAD3BQ5T9A4 648 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 DEPDC4Q8N2C3 294 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 C17orf78Q8N4C9 275 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 EIF1ADQ8N9N8 165 aaKnown RBP13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 OR9K2Q8NGE7 335 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 PNPT1Q8TCS8 783 aaKnown RBP13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 TMEM45BQ96B21 275 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 FOXN4Q96NZ1 517 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 SORT1Q99523 831 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 SLC35A5Q9BS91 424 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 DPY30Q9C005 99 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 NELFAQ9H3P2 528 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 FKRPQ9H9S5 495 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 POLE3Q9NRF9 147 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 RLIMQ9NVW2 624 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 LPAR3Q9UBY5 353 aa13.47□□□□□ -0.25
CLSTN3-213ENST00000541953 LOC100289279A0A1B0GTE1 492 aa13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 PRSS51A0A1B0GVH4 220 aa13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 AGAP5A6NIR3 686 aa13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 LIPT2A6NK58 231 aa13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 ALDOCP09972 364 aaKnown RBP13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 NUDT17P0C025 328 aa13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 GKN3PP0CG01 181 aa13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 IL12AP29459 219 aa13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 CALCRP30988 508 aa13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 IL2RGP31785 369 aa13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 CLK1P49759 484 aaKnown RBP13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 SELENOPP49908 381 aa13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 SLC35A1P78382 337 aa13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 CEACAM7Q14002 265 aa13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 OR7A5Q15622 319 aa13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 CARTPTQ16568 116 aa13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 MRPL2Q5T653 305 aaKnown RBP13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 PAQR6Q6TCH4 344 aa13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 AURKBQ96GD4 344 aaPredicted RBP13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 C1orf159Q96HA4 380 aa13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 ALKBH3Q96Q83 286 aaPredicted RBP13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 BPESC1Q9GZL8 116 aa13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 SLC6A13Q9NSD5 602 aa13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 PCDHGB4Q9UN71 923 aa13.46□□□□□ -0.25
CLSTN3-213ENST00000541953 LRP5LA4QPB2 252 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 ZNF503-AS2A6NEH8 195 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 ZNF208O43345 1280 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 GSNP06396 782 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 C8BP07358 591 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 IGFBP1P08833 259 aaPredicted RBP13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 CELA3BP08861 270 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 CSF3P09919 207 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 PRG2P13727 222 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 CHI3L1P36222 383 aaPredicted RBP13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 SLC1A3P43003 542 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 GZMKP49863 264 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 PDLIM4P50479 330 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 CHRNB3Q05901 458 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 EPS8Q12929 822 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 MAD2L1Q13257 205 aaPredicted RBP13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 ADIPOQQ15848 244 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 TBRG1Q3YBR2 411 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 FAM174BQ3ZCQ3 159 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 FAM166AQ6J272 317 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 AAED1Q7RTV5 226 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 ZCCHC24Q8N2G6 241 aaKnown RBP13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 RIBC1Q8N443 379 aaPredicted RBP13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 OR1K1Q8NGR3 316 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 WDR60Q8WVS4 1066 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 OIT3Q8WWZ8 545 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 TESCQ96BS2 214 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 ZBTB9Q96C00 473 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 DDIT4LQ96D03 193 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 PIMREGQ9BSJ6 248 aa13.45□□□□□ -0.26
CLSTN3-213ENST00000541953 ADAM19Q9H013 955 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms