RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 TPST2O60704 377 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 VAMP5O95183 116 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 AGAP20933 346 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 ATP6V1B2P21281 511 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 ENPP1P22413 925 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 DIO1P49895 249 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 CLDN20P56880 219 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 NUP107P57740 925 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 DGCR6Q14129 220 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 CTU2Q2VPK5 515 aaKnown RBP15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 SPATA24Q86W54 205 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 ZDHHC21Q8IVQ6 265 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 ATP6V1C2Q8NEY4 427 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 MBD3L2Q8NHZ7 208 aaPredicted RBP15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 ASB5Q8WWX0 329 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 C7orf34Q96L11 122 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 TRIB1Q96RU8 372 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 PIP5K1AQ99755 562 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 TUBA1CQ9BQE3 449 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 NDUFAF4Q9P032 175 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 MED31Q9Y3C7 131 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 UTP20O75691 2785 aaKnown RBP15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 TCRBV5S2A0A599 114 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 NPIPB7O75200 414 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 WISP2O76076 250 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 SEMG1P04279 462 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 H1F0P07305 194 aaKnown RBP15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 IFNGR2P38484 337 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 MAGEA2P43356 314 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 AGFG1P52594 562 aaKnown RBP15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 SUCLG1P53597 346 aaKnown RBP15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 MYBPHQ13203 477 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 PIN1Q13526 163 aaPredicted RBP15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 PDK3Q15120 406 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 ANKDD1AQ495B1 522 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 DCST1Q5T197 706 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 PAQR6Q6TCH4 344 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 GDF7Q7Z4P5 450 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 RBM45Q8IUH3 476 aaKnown RBP15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 MCEMP1Q8IX19 187 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 FAM26EQ8N5C1 309 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 OR4D11Q8NGI4 311 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 PIGXQ8TBF5 258 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 RSRC1Q96IZ7 334 aaKnown RBP15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 SEPHS2Q99611 448 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 KLHDC3Q9BQ90 382 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 TTYH2Q9BSA4 534 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 ZNF426Q9BUY5 554 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 TMEM185BQ9H7F4 350 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 KLHL9Q9P2J3 617 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 TINAGQ9UJW2 476 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 A4GNTQ9UNA3 340 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 MYO9AB2RTY4 2548 aa15.72■□□□□ 0.11
CLSTN3-210ENST00000540931 NBPF19A0A087WUL8 3843 aa15.71■□□□□ 0.11
CLSTN3-210ENST00000540931 TCRBV3S1A0A5B6 114 aa15.71■□□□□ 0.11
CLSTN3-210ENST00000540931 GPR171O14626 319 aa15.71■□□□□ 0.11
CLSTN3-210ENST00000540931 RCBTB2O95199 551 aa15.71■□□□□ 0.11
CLSTN3-210ENST00000540931 IL18BPO95998 194 aa15.71■□□□□ 0.11
CLSTN3-210ENST00000540931 CCNA2P20248 432 aa15.71■□□□□ 0.11
CLSTN3-210ENST00000540931 PON3Q15166 354 aa15.71■□□□□ 0.11
CLSTN3-210ENST00000540931 XKRXQ6PP77 449 aa15.71■□□□□ 0.11
CLSTN3-210ENST00000540931 SCAIQ8N9R8 606 aa15.71■□□□□ 0.11
CLSTN3-210ENST00000540931 TMEM239Q8WW34 195 aa15.71■□□□□ 0.11
CLSTN3-210ENST00000540931 ACOT11Q8WXI4 607 aaPredicted RBP15.71■□□□□ 0.11
CLSTN3-210ENST00000540931 DMRTA2Q96SC8 542 aa15.71■□□□□ 0.11
CLSTN3-210ENST00000540931 NPAS1Q99742 590 aa15.71■□□□□ 0.11
CLSTN3-210ENST00000540931 RNF122Q9H9V4 155 aa15.71■□□□□ 0.11
CLSTN3-210ENST00000540931 NMNAT1Q9HAN9 279 aaPredicted RBP15.71■□□□□ 0.11
CLSTN3-210ENST00000540931 EMC3Q9P0I2 261 aa15.71■□□□□ 0.11
CLSTN3-210ENST00000540931 CLCF1Q9UBD9 225 aa15.71■□□□□ 0.11
CLSTN3-210ENST00000540931 ZNF629Q9UEG4 869 aaPredicted RBP15.71■□□□□ 0.11
CLSTN3-210ENST00000540931 TMCC3Q9ULS5 477 aa15.71■□□□□ 0.11
CLSTN3-210ENST00000540931 TMEM5Q9Y2B1 443 aa15.71■□□□□ 0.11
CLSTN3-210ENST00000540931 B3GALT5Q9Y2C3 310 aa15.71■□□□□ 0.11
CLSTN3-210ENST00000540931 ICE1Q9Y2F5 2266 aa15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 UNC79Q9P2D8 2635 aa15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 LRRTM2O43300 516 aa15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 CXCL13O43927 109 aa15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 FZD7O75084 574 aa15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 MT-ND1P03886 318 aa15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 HIST1H2ABP04908 130 aa15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 FCGR1AP12314 374 aa15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 TNFRSF1BP20333 461 aa15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 IL11P20809 199 aa15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 OPRM1P35372 400 aa15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 OR2B6P58173 313 aa15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 VLDLRP98155 873 aa15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 ZNF239Q16600 458 aaKnown RBP15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 C1QL3Q5VWW1 255 aa15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 HIST3H2AQ7L7L0 130 aa15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 MAMDC2Q7Z304 686 aaPredicted RBP15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 ADPRHL1Q8NDY3 354 aa15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 OR10Q1Q8NGQ4 319 aa15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 HIST1H2ACQ93077 130 aa15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 ZNF524Q96C55 264 aa15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 LRRC46Q96FV0 321 aa15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 GMPPAQ96IJ6 420 aaPredicted RBP15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 WFDC6Q9BQY6 131 aa15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 SF3B5Q9BWJ5 86 aaKnown RBP15.7■□□□□ 0.1
CLSTN3-210ENST00000540931 ASPNQ9BXN1 380 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms