RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 PTPMT1Q8WUK0 201 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-208ENST00000537004 ARSGQ96EG1 525 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 ZNF559Q9BR84 538 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 EVA1AQ9H8M9 152 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 KRCC1Q9NPI7 259 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-208ENST00000537004 RHBDL2Q9NX52 303 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 PRODH2Q9UF12 536 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 CBLCQ9ULV8 474 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 OR10H1Q9Y4A9 318 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 PCNX3Q9H6A9 2034 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 NPIPB9F8W1W9 429 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 LYPD3O95274 346 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 PTHP01270 115 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 ADRA2AP08913 450 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 CD36P16671 472 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 EFNB1P98172 346 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 OC90Q02509 493 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-208ENST00000537004 ZNF141Q15928 474 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 SNAPC1Q16533 368 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 TIGD6Q17RP2 521 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 SYT14P1Q58G82 188 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 CLEC12AQ5QGZ9 265 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 GRAMD2AQ8IUY3 354 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 BCORP1Q8N888 145 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 OR7G1Q8NGA0 311 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 OSTF1Q92882 214 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 SENP5Q96HI0 755 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-208ENST00000537004 DEFB126Q9BYW3 111 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 RNF32Q9H0A6 362 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 TBCCD1Q9NVR7 557 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 DNAJB12Q9NXW2 375 aaKnown RBP10.87□□□□□ -0.67
CLIP1-208ENST00000537004 TAS2R16Q9NYV7 291 aa10.87□□□□□ -0.67
CLIP1-208ENST00000537004 RPL36Q9Y3U8 105 aaKnown RBP10.87□□□□□ -0.67
CLIP1-208ENST00000537004 M0R082 166 aa10.86□□□□□ -0.67
CLIP1-208ENST00000537004 CDC42EP2O14613 210 aa10.86□□□□□ -0.67
CLIP1-208ENST00000537004 SLC22A1O15245 554 aa10.86□□□□□ -0.67
CLIP1-208ENST00000537004 RNF224P0DH78 156 aa10.86□□□□□ -0.67
CLIP1-208ENST00000537004 DBTP11182 482 aaKnown RBP10.86□□□□□ -0.67
CLIP1-208ENST00000537004 LIPAP38571 399 aa10.86□□□□□ -0.67
CLIP1-208ENST00000537004 ZNF91Q05481 1191 aa10.86□□□□□ -0.67
CLIP1-208ENST00000537004 FGFBP1Q14512 234 aa10.86□□□□□ -0.67
CLIP1-208ENST00000537004 OR1C1Q15619 314 aa10.86□□□□□ -0.67
CLIP1-208ENST00000537004 C1QTNF12Q5T7M4 302 aa10.86□□□□□ -0.67
CLIP1-208ENST00000537004 MEDAGQ5VYS4 303 aa10.86□□□□□ -0.67
CLIP1-208ENST00000537004 ZNF613Q6PF04 617 aa10.86□□□□□ -0.67
CLIP1-208ENST00000537004 ZNF620Q6ZNG0 422 aa10.86□□□□□ -0.67
CLIP1-208ENST00000537004 LSRQ86X29 649 aaPredicted RBP10.86□□□□□ -0.67
CLIP1-208ENST00000537004 TMEM239Q8WW34 195 aa10.86□□□□□ -0.67
CLIP1-208ENST00000537004 LRR1Q96L50 414 aa10.86□□□□□ -0.67
CLIP1-208ENST00000537004 SLC38A2Q96QD8 506 aa10.86□□□□□ -0.67
CLIP1-208ENST00000537004 UTP23Q9BRU9 249 aaKnown RBP10.86□□□□□ -0.67
CLIP1-208ENST00000537004 TSSK6Q9BXA6 273 aa10.86□□□□□ -0.67
CLIP1-208ENST00000537004 OR8D2Q9GZM6 311 aa10.86□□□□□ -0.67
CLIP1-208ENST00000537004 TMEM27Q9HBJ8 222 aa10.86□□□□□ -0.67
CLIP1-208ENST00000537004 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.86□□□□□ -0.67
CLIP1-208ENST00000537004 TBC1D23Q9NUY8 699 aa10.86□□□□□ -0.67
CLIP1-208ENST00000537004 IL20Q9NYY1 176 aa10.86□□□□□ -0.67
CLIP1-208ENST00000537004 CLCA3PQ9Y6N3 262 aa10.86□□□□□ -0.67
CLIP1-208ENST00000537004 ADGRG4Q8IZF6 3080 aa10.86□□□□□ -0.67
CLIP1-208ENST00000537004 ANKUB1A6NFN9 424 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 TMEM200CA6NKL6 621 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 NEURL1O76050 574 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 ACAA2P42765 397 aaKnown RBP10.85□□□□□ -0.67
CLIP1-208ENST00000537004 ATP12AP54707 1039 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 PSMD4P55036 377 aaKnown RBP10.85□□□□□ -0.67
CLIP1-208ENST00000537004 SLC37A1P57057 533 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 MLF1P58340 268 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 LSM3P62310 102 aaKnown RBP10.85□□□□□ -0.67
CLIP1-208ENST00000537004 ELAVL1Q15717 326 aaKnown RBP10.85□□□□□ -0.67
CLIP1-208ENST00000537004 ZNF766Q5HY98 468 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 SLC30A6Q6NXT4 461 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 ZNF227Q86WZ6 799 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 RNF113BQ8IZP6 322 aaKnown RBP10.85□□□□□ -0.67
CLIP1-208ENST00000537004 ZBTB8BQ8NAP8 495 aaPredicted RBP10.85□□□□□ -0.67
CLIP1-208ENST00000537004 MDS2Q8NDY4 140 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 TMEM163Q8TC26 289 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 ZNF582Q96NG8 517 aaPredicted RBP10.85□□□□□ -0.67
CLIP1-208ENST00000537004 PRRG3Q9BZD7 231 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 C20orf141Q9NUB4 165 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 CDH10Q9Y6N8 788 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 A0A0B4J2E0 115 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 A0A1B0GX12 115 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 CLEC18AA5D8T8 446 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 UNC119BA6NIH7 251 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 DYRK3O43781 588 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 ADAM11O75078 769 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 DDAH2O95865 285 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.85□□□□□ -0.67
CLIP1-208ENST00000537004 ZSWIM7Q19AV6 140 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 FAM180AQ6UWF9 173 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 CLEC18BQ6UXF7 455 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 ZNF367Q7RTV3 350 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 CROCCP3Q8IVE0 287 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 CLDN22Q8N7P3 220 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 CLEC18CQ8NCF0 446 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 PFN4Q8NHR9 129 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 NDNFQ8TB73 568 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 TMEM80Q96HE8 168 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 FLRT3Q9NZU0 649 aa10.85□□□□□ -0.67
CLIP1-208ENST00000537004 LRFN1Q9P244 771 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms