RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 PLEKHH1Q9ULM0 1364 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 IGHV3OR16-13A0A075B7E8 117 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 A0A0J9YXY3 114 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 BTN3A3O00478 584 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 TAPBPO15533 448 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 LATO43561 262 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 CLDN9O95484 217 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 LGI1O95970 557 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 KRT6AP02538 564 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 IGKV3-11P04433 115 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 NCF2P19878 526 aaPredicted RBP1.91□□□□□ -2.1
CD44-238ENST00000534296 HNF1AP20823 631 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 RBMXP38159 391 aaKnown RBP1.91□□□□□ -2.1
CD44-238ENST00000534296 SLC26A3P40879 764 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 GRIA1P42261 906 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 P2RY1P47900 373 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 ARRB1P49407 418 aaPredicted RBP1.91□□□□□ -2.1
CD44-238ENST00000534296 HNMTP50135 292 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 KPNA2P52292 529 aaKnown RBP1.91□□□□□ -2.1
CD44-238ENST00000534296 EFNB2P52799 333 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 HSPA2P54652 639 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 SH3BGRP55822 239 aaPredicted RBP1.91□□□□□ -2.1
CD44-238ENST00000534296 BIDP55957 195 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 TAS2R19P59542 299 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 PRPS1P60891 318 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 TNFRSF17Q02223 184 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 GPM6BQ13491 265 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 SLC15A2Q16348 729 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 PARP15Q460N3 678 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 TIGITQ495A1 244 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 FILIP1LQ4L180 1135 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 BOLA3Q53S33 107 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 PAGE3Q5JUK9 113 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 OR52E8Q6IFG1 317 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 TMIGD1Q6UXZ0 262 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 LRRC74BQ6ZQY2 392 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 RUFY3Q7L099 469 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 EFL1Q7Z2Z2 1120 aaKnown RBP1.91□□□□□ -2.1
CD44-238ENST00000534296 NANOGNBQ7Z5D8 188 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 TBC1D21Q8IYX1 336 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 STEAP2Q8NFT2 490 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 OR56B4Q8NH76 319 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 ZNF564Q8TBZ8 553 aaPredicted RBP1.91□□□□□ -2.1
CD44-238ENST00000534296 PAQR8Q8TEZ7 354 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 FRAT1Q92837 279 aaPredicted RBP1.91□□□□□ -2.1
CD44-238ENST00000534296 FGF11Q92914 225 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 ELSPBP1Q96BH3 223 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 PELI1Q96FA3 418 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 TIMD4Q96H15 378 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 ZBTB18Q99592 522 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 NPAS2Q99743 824 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 ARHGDIGQ99819 225 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 TMEM43Q9BTV4 400 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 ZSCAN5AQ9BUG6 496 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 LRRN3Q9H3W5 708 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 THUMPD1Q9NXG2 353 aaKnown RBP1.91□□□□□ -2.1
CD44-238ENST00000534296 PTBP2Q9UKA9 531 aaKnown RBP1.91□□□□□ -2.1
CD44-238ENST00000534296 UGT2A1Q9Y4X1 527 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 TIMM10BQ9Y5J6 103 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 CFAP65Q6ZU64 1925 aaKnown RBP1.91□□□□□ -2.1
CD44-238ENST00000534296 ATP10AO60312 1499 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 SYNJ2BP-COX16A0A087WUM0 186 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 TCRBV9S1A1TA0A576 114 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 PINLYPA6NC86 204 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 A6NIZ1 184 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 VSTM2BA6NLU5 285 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 ZNF705EA8MWA4 302 aaPredicted RBP1.9□□□□□ -2.11
CD44-238ENST00000534296 K7N7A8 449 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 AGPAT2O15120 278 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 WBP4O75554 376 aaKnown RBP1.9□□□□□ -2.11
CD44-238ENST00000534296 IQCF3P0C7M6 154 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 PNMA6AP0CW24 399 aaPredicted RBP1.9□□□□□ -2.11
CD44-238ENST00000534296 NR2C1P13056 603 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 TNNI1P19237 187 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 HTR1EP28566 365 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 AQP1P29972 269 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 FMO3P31513 532 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 CCR1P32246 355 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 RORAP35398 523 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 HSD17B2P37059 387 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 MAP3K8P41279 467 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 CSNK1DP48730 415 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 AIF1P55008 147 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 APOC4P55056 127 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 UCNP55089 124 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 ACTR1AP61163 376 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 RAP1BP61224 184 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 ERVK-25P63136 954 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 OGDHQ02218 1023 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 IL24Q13007 206 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 MRPL28Q13084 256 aaKnown RBP1.9□□□□□ -2.11
CD44-238ENST00000534296 NSUN5P1Q3KNT7 163 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 OTPQ5XKR4 325 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 C11orf71Q6IPW1 123 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 PYHIN1Q6K0P9 492 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 ZNF544Q6NX49 715 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 UNQ9370/PRO34162Q6UXP9 181 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 TIFABQ6ZNK6 161 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 FAM220AQ7Z4H9 259 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 SLC26A11Q86WA9 606 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms