RNA–Protein interactions for RNA: ENST00000533979.5

ATM-223, Transcript of ATM serine/threonine kinase, human

TSL 3

Gene ATM, Length 705 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATM-223	ENST00000533979	TRBV11-1	A0A0K0K1C0	115 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979		G3V4G9	280 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	GOLGA6L19	H0YKK7	550 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	NR5A2	O00482	541 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	TM9SF1	O15321	606 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	MSH4	O15457	936 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	LRAT	O95237	230 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	POP4	O95707	220 aa	Known RBP	3.9	□□□□□ -1.79
ATM-223	ENST00000533979	TGM6	O95932	706 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	CA1	P00915	261 aa	Predicted RBP	3.9	□□□□□ -1.79
ATM-223	ENST00000533979	OAS1	P00973	400 aa	Known RBP	3.9	□□□□□ -1.79
ATM-223	ENST00000533979	IGHG3	P01860	377 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	GAPDH	P04406	335 aa	Known RBP	3.9	□□□□□ -1.79
ATM-223	ENST00000533979	ERCC1	P07992	297 aa	Predicted RBP	3.9	□□□□□ -1.79
ATM-223	ENST00000533979	PLEK	P08567	350 aa	Predicted RBP	3.9	□□□□□ -1.79
ATM-223	ENST00000533979	ALOX5	P09917	674 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	ZNF883	P0CG24	379 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	STAG3L2	P0CL84	134 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	CEACAM8	P31997	349 aa	Predicted RBP	3.9	□□□□□ -1.79
ATM-223	ENST00000533979	BCAP31	P51572	246 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	PLTP	P55058	493 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	ARPC4	P59998	168 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	XIAP	P98170	497 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	ASPH	Q12797	758 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	ILK	Q13418	452 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	CUL1	Q13616	776 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	UBE2V2	Q15819	145 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	SGSM1	Q2NKQ1	1148 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	SMUG1	Q53HV7	270 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	CYBRD1	Q53TN4	286 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	BEND3	Q5T5X7	828 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	ZC2HC1B	Q5TFG8	222 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	SLC25A47	Q6Q0C1	308 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	PAQR6	Q6TCH4	344 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	RBMS3	Q6XE24	437 aa	Known RBP	3.9	□□□□□ -1.79
ATM-223	ENST00000533979	USP50	Q70EL3	339 aa	Predicted RBP	3.9	□□□□□ -1.79
ATM-223	ENST00000533979	NOTCH2NL	Q7Z3S9	236 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	HSD11B1L	Q7Z5J1	315 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	TRIM69	Q86WT6	500 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	APLF	Q8IW19	511 aa	Predicted RBP	3.9	□□□□□ -1.79
ATM-223	ENST00000533979	MICU2	Q8IYU8	434 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	TCAIM	Q8N3R3	496 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	PQLC3	Q8N755	202 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	ZNF485	Q8NCK3	441 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	OR5L2	Q8NGL0	311 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	OR1L6	Q8NGR2	347 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	OR6F1	Q8NGZ6	308 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	CNIH3	Q8TBE1	160 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	GATAD1	Q8WUU5	269 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	ZNRF4	Q8WWF5	429 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	HPSE2	Q8WWQ2	592 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	TMEM143	Q96AN5	459 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	PPP1R16A	Q96I34	528 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	ART5	Q96L15	291 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	PANX2	Q96RD6	677 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	IL4I1	Q96RQ9	567 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	NKX3-1	Q99801	234 aa	Predicted RBP	3.9	□□□□□ -1.79
ATM-223	ENST00000533979	OVOL2	Q9BRP0	275 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	SPATA16	Q9BXB7	569 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	SPZ1	Q9BXG8	430 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	ILKAP	Q9H0C8	392 aa	Predicted RBP	3.9	□□□□□ -1.79
ATM-223	ENST00000533979	NXF5	Q9H1B4	397 aa	Known RBP	3.9	□□□□□ -1.79
ATM-223	ENST00000533979	FBXO44	Q9H4M3	255 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	IKZF5	Q9H5V7	419 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	SYNDIG1	Q9H7V2	258 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	PSTPIP2	Q9H939	334 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979		Q9HAA7	133 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	NT5M	Q9NPB1	228 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	C20orf96	Q9NUD7	363 aa	Predicted RBP	3.9	□□□□□ -1.79
ATM-223	ENST00000533979	INTS9	Q9NV88	658 aa	Known RBP	3.9	□□□□□ -1.79
ATM-223	ENST00000533979	TEX10	Q9NXF1	929 aa	Predicted RBP	3.9	□□□□□ -1.79
ATM-223	ENST00000533979	ATPIF1	Q9UII2	106 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	DHRS7	Q9Y394	339 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	ATP6V1D	Q9Y5K8	247 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	SALL1	Q9NSC2	1324 aa		3.9	□□□□□ -1.79
ATM-223	ENST00000533979	RPAP1	Q9BWH6	1393 aa	Predicted RBP	3.89	□□□□□ -1.79
ATM-223	ENST00000533979	ITGB4	P16144	1822 aa		3.89	□□□□□ -1.79
ATM-223	ENST00000533979	TRAV6	A0A075B6T7	132 aa		3.89	□□□□□ -1.79
ATM-223	ENST00000533979	NPIPA5	A0A0B4J1W7	369 aa		3.89	□□□□□ -1.79
ATM-223	ENST00000533979	NPIPA5	E9PKD4	350 aa		3.89	□□□□□ -1.79
ATM-223	ENST00000533979	RS1	O15537	224 aa		3.89	□□□□□ -1.79
ATM-223	ENST00000533979	RRP8	O43159	456 aa	Known RBP	3.89	□□□□□ -1.79
ATM-223	ENST00000533979	RAMP3	O60896	148 aa		3.89	□□□□□ -1.79
ATM-223	ENST00000533979	DIRAS1	O95057	198 aa		3.89	□□□□□ -1.79
ATM-223	ENST00000533979	IGLV1-44	P01699	117 aa		3.89	□□□□□ -1.79
ATM-223	ENST00000533979	HPGD	P15428	266 aa		3.89	□□□□□ -1.79
ATM-223	ENST00000533979	GNB3	P16520	340 aa		3.89	□□□□□ -1.79
ATM-223	ENST00000533979	IMPDH1	P20839	514 aa		3.89	□□□□□ -1.79
ATM-223	ENST00000533979	PTN	P21246	168 aa		3.89	□□□□□ -1.79
ATM-223	ENST00000533979	PPP2R1B	P30154	601 aa		3.89	□□□□□ -1.79
ATM-223	ENST00000533979	RPL13A	P40429	203 aa	Known RBP	3.89	□□□□□ -1.79
ATM-223	ENST00000533979	ID1	P41134	155 aa		3.89	□□□□□ -1.79
ATM-223	ENST00000533979	SOX3	P41225	446 aa		3.89	□□□□□ -1.79
ATM-223	ENST00000533979	HAAO	P46952	286 aa		3.89	□□□□□ -1.79
ATM-223	ENST00000533979	GYG1	P46976	350 aa		3.89	□□□□□ -1.79
ATM-223	ENST00000533979	TAF6	P49848	677 aa		3.89	□□□□□ -1.79
ATM-223	ENST00000533979	YWHAG	P61981	247 aa	Known RBP eCLIP	3.89	□□□□□ -1.79
ATM-223	ENST00000533979	CDR2	Q01850	454 aa		3.89	□□□□□ -1.79
ATM-223	ENST00000533979	IRF8	Q02556	426 aa		3.89	□□□□□ -1.79
ATM-223	ENST00000533979	PPID	Q08752	370 aa	Known RBP	3.89	□□□□□ -1.79

Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms