RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 TRIM2Q9C040 744 aa13.41□□□□□ -0.26
CPSF1-208ENST00000532560 OPN3Q9H1Y3 402 aaPredicted RBP13.41□□□□□ -0.26
CPSF1-208ENST00000532560 PIF1Q9H611 641 aa13.41□□□□□ -0.26
CPSF1-208ENST00000532560 EFCAB1Q9HAE3 211 aa13.41□□□□□ -0.26
CPSF1-208ENST00000532560 BCO1Q9HAY6 547 aa13.41□□□□□ -0.26
CPSF1-208ENST00000532560 C12orf10Q9HB07 376 aa13.41□□□□□ -0.26
CPSF1-208ENST00000532560 PLSCR4Q9NRQ2 329 aa13.41□□□□□ -0.26
CPSF1-208ENST00000532560 TMEM181Q9P2C4 612 aa13.41□□□□□ -0.26
CPSF1-208ENST00000532560 TAGLN3Q9UI15 199 aa13.41□□□□□ -0.26
CPSF1-208ENST00000532560 ZC3H12DA2A288 527 aaKnown RBP13.4□□□□□ -0.26
CPSF1-208ENST00000532560 A8MVM7 634 aa13.4□□□□□ -0.26
CPSF1-208ENST00000532560 GSC2O15499 205 aa13.4□□□□□ -0.26
CPSF1-208ENST00000532560 FMO6PO60774 539 aa13.4□□□□□ -0.26
CPSF1-208ENST00000532560 LGI1O95970 557 aa13.4□□□□□ -0.26
CPSF1-208ENST00000532560 CD247P20963 164 aa13.4□□□□□ -0.26
CPSF1-208ENST00000532560 SSTR2P30874 369 aa13.4□□□□□ -0.26
CPSF1-208ENST00000532560 CPOXP36551 454 aa13.4□□□□□ -0.26
CPSF1-208ENST00000532560 KCNJ5P48544 419 aa13.4□□□□□ -0.26
CPSF1-208ENST00000532560 NUDT2P50583 147 aa13.4□□□□□ -0.26
CPSF1-208ENST00000532560 CRYBA2P53672 197 aa13.4□□□□□ -0.26
CPSF1-208ENST00000532560 DUSP7Q16829 419 aa13.4□□□□□ -0.26
CPSF1-208ENST00000532560 TMEM201Q5SNT2 666 aa13.4□□□□□ -0.26
CPSF1-208ENST00000532560 ZNF474Q6S9Z5 364 aaPredicted RBP13.4□□□□□ -0.26
CPSF1-208ENST00000532560 RANBP3LQ86VV4 465 aaPredicted RBP13.4□□□□□ -0.26
CPSF1-208ENST00000532560 TUSC5Q8IXB3 177 aa13.4□□□□□ -0.26
CPSF1-208ENST00000532560 SLC15A3Q8IY34 581 aa13.4□□□□□ -0.26
CPSF1-208ENST00000532560 OR2T12Q8NG77 320 aa13.4□□□□□ -0.26
CPSF1-208ENST00000532560 GPR32P1Q8NGA4 272 aa13.4□□□□□ -0.26
CPSF1-208ENST00000532560 OR52E4Q8NGH9 312 aa13.4□□□□□ -0.26
CPSF1-208ENST00000532560 DNAJA4Q8WW22 397 aaPredicted RBP13.4□□□□□ -0.26
CPSF1-208ENST00000532560 ARL8BQ9NVJ2 186 aa13.4□□□□□ -0.26
CPSF1-208ENST00000532560 CMTM6Q9NX76 183 aa13.4□□□□□ -0.26
CPSF1-208ENST00000532560 RPS6KB2Q9UBS0 482 aa13.4□□□□□ -0.26
CPSF1-208ENST00000532560 ING1Q9UK53 422 aaPredicted RBP13.4□□□□□ -0.26
CPSF1-208ENST00000532560 ANKHD1Q8IWZ3 2542 aaKnown RBP13.4□□□□□ -0.26
CPSF1-208ENST00000532560 TEX15Q9BXT5 2789 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 IGKV3D-15A0A087WSY6 115 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 A0A1B0GWA3 101 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 ZNF724A8MTY0 619 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 EIF1BO60739 113 aaKnown RBP13.39□□□□□ -0.27
CPSF1-208ENST00000532560 NPIPB7O75200 414 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 GPIP06744 558 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 YES1P07947 543 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 IMPDH2P12268 514 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 KLK2P20151 261 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 IDUAP35475 653 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 CD79BP40259 229 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 KIR2DL3P43628 341 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 OR2B6P58173 313 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 SLC35A1P78382 337 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 H3F3AP84243 136 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 RASGEF1BQ0VAM2 473 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 PDK3Q15120 406 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 MICU2Q8IYU8 434 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 ZNF610Q8N9Z0 462 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 PIGXQ8TBF5 258 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 STK35Q8TDR2 534 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 SLC26A7Q8TE54 656 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 FAM222BQ8WU58 562 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 WFDC6Q9BQY6 131 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 CADM1Q9BY67 442 aaKnown RBP13.39□□□□□ -0.27
CPSF1-208ENST00000532560 ELOVL5Q9NYP7 299 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 USP22Q9UPT9 525 aa13.39□□□□□ -0.27
CPSF1-208ENST00000532560 CENPEQ02224 2701 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 A0A0B4J2E0 115 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 A0A1B0GX12 115 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 ELOVL7A1L3X0 281 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 TUBAL3A6NHL2 446 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 LIPT2A6NK58 231 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 ELOA3DA6NLF2 546 aaPredicted RBP13.38□□□□□ -0.27
CPSF1-208ENST00000532560 ZNF716A6NP11 495 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 M0R3H8 397 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 NME4O00746 187 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 PNMTP11086 282 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 CCKARP32238 428 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 SLC7A2P52569 658 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 SLC16A1P53985 500 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 BNIP2Q12982 314 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 SNTB1Q13884 538 aaKnown RBP13.38□□□□□ -0.27
CPSF1-208ENST00000532560 ELOA3BQ3SY89 546 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 ALG10BQ5I7T1 473 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 C1orf140Q5VVS0 124 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 ULK3Q6PHR2 472 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 PAQR6Q6TCH4 344 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 TFAP2EQ6VUC0 442 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 STK32CQ86UX6 486 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 LSRQ86X29 649 aaPredicted RBP13.38□□□□□ -0.27
CPSF1-208ENST00000532560 ELOA3Q8NG57 546 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 DNAJA3Q96EY1 480 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 C12orf49Q9H741 205 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 TMEM27Q9HBJ8 222 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 CRIM1Q9NZV1 1036 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 EMC3Q9P0I2 261 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 ABCD2Q9UBJ2 740 aa13.38□□□□□ -0.27
CPSF1-208ENST00000532560 CACNA1DQ01668 2161 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 MPDZO75970 2070 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 ZNF814B7Z6K7 855 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 TPST2O60704 377 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 FZD7O75084 574 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 CIB2O75838 187 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms