RNA–Protein interactions for RNA: ENST00000530495.1

CAPN1-219, Transcript of calpain 1, humanhuman

TSL 5

Gene CAPN1, Length 572 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-219ENST00000530495 PAQR6Q6TCH4 344 aa13.03□□□□□ -0.32
CAPN1-219ENST00000530495 HMGN2P46Q86SG4 172 aa13.03□□□□□ -0.32
CAPN1-219ENST00000530495 CMIPQ8IY22 773 aa13.03□□□□□ -0.32
CAPN1-219ENST00000530495 ZIC4Q8N9L1 334 aa13.03□□□□□ -0.32
CAPN1-219ENST00000530495 CNOT9Q92600 299 aaKnown RBP13.03□□□□□ -0.32
CAPN1-219ENST00000530495 FBXO17Q96EF6 278 aa13.03□□□□□ -0.32
CAPN1-219ENST00000530495 FOXN4Q96NZ1 517 aa13.03□□□□□ -0.32
CAPN1-219ENST00000530495 SORCS2Q96PQ0 1159 aa13.03□□□□□ -0.32
CAPN1-219ENST00000530495 PIMREGQ9BSJ6 248 aa13.03□□□□□ -0.32
CAPN1-219ENST00000530495 FKBP7Q9Y680 259 aa13.03□□□□□ -0.32
CAPN1-219ENST00000530495 FAAHO00519 579 aa13.02□□□□□ -0.33
CAPN1-219ENST00000530495 AP3D1O14617 1153 aa13.02□□□□□ -0.33
CAPN1-219ENST00000530495 SPAG7O75391 227 aa13.02□□□□□ -0.33
CAPN1-219ENST00000530495 CPSF4O95639 269 aaKnown RBP13.02□□□□□ -0.33
CAPN1-219ENST00000530495 NUDT17P0C025 328 aa13.02□□□□□ -0.33
CAPN1-219ENST00000530495 PAX7P23759 505 aa13.02□□□□□ -0.33
CAPN1-219ENST00000530495 TACR3P29371 465 aa13.02□□□□□ -0.33
CAPN1-219ENST00000530495 SERPINF1P36955 418 aa13.02□□□□□ -0.33
CAPN1-219ENST00000530495 SLC1A3P43003 542 aa13.02□□□□□ -0.33
CAPN1-219ENST00000530495 SRSF2Q01130 221 aaKnown RBP13.02□□□□□ -0.33
CAPN1-219ENST00000530495 GPAT3Q53EU6 434 aa13.02□□□□□ -0.33
CAPN1-219ENST00000530495 ANXA8L1Q5VT79 327 aa13.02□□□□□ -0.33
CAPN1-219ENST00000530495 IL17RELQ6ZVW7 336 aa13.02□□□□□ -0.33
CAPN1-219ENST00000530495 AAED1Q7RTV5 226 aa13.02□□□□□ -0.33
CAPN1-219ENST00000530495 ANKRD46Q86W74 232 aa13.02□□□□□ -0.33
CAPN1-219ENST00000530495 RIBC1Q8N443 379 aaPredicted RBP13.02□□□□□ -0.33
CAPN1-219ENST00000530495 POMGNT2Q8NAT1 580 aa13.02□□□□□ -0.33
CAPN1-219ENST00000530495 VPS37AQ8NEZ2 397 aa13.02□□□□□ -0.33
CAPN1-219ENST00000530495 NEURL3Q96EH8 262 aa13.02□□□□□ -0.33
CAPN1-219ENST00000530495 SF3B5Q9BWJ5 86 aaKnown RBP13.02□□□□□ -0.33
CAPN1-219ENST00000530495 DPY30Q9C005 99 aa13.02□□□□□ -0.33
CAPN1-219ENST00000530495 PIF1Q9H611 641 aa13.02□□□□□ -0.33
CAPN1-219ENST00000530495 AKTIPQ9H8T0 292 aa13.02□□□□□ -0.33
CAPN1-219ENST00000530495 CHODLQ9H9P2 273 aa13.02□□□□□ -0.33
CAPN1-219ENST00000530495 MYOZ1Q9NP98 299 aaPredicted RBP13.02□□□□□ -0.33
CAPN1-219ENST00000530495 OBP2BQ9NPH6 170 aa13.02□□□□□ -0.33
CAPN1-219ENST00000530495 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.02□□□□□ -0.331e-6■□□□□ 10.8
CAPN1-219ENST00000530495 IGHV4-61A0A0C4DH41 118 aa13.01□□□□□ -0.33
CAPN1-219ENST00000530495 ZC3H12DA2A288 527 aaKnown RBP13.01□□□□□ -0.33
CAPN1-219ENST00000530495 AGAP5A6NIR3 686 aa13.01□□□□□ -0.33
CAPN1-219ENST00000530495 HMGN4O00479 90 aa13.01□□□□□ -0.33
CAPN1-219ENST00000530495 BPGMP07738 259 aa13.01□□□□□ -0.33
CAPN1-219ENST00000530495 APEHP13798 732 aaKnown RBP13.01□□□□□ -0.33
CAPN1-219ENST00000530495 KHKP50053 298 aa13.01□□□□□ -0.33
CAPN1-219ENST00000530495 SNRPD2P62316 118 aaKnown RBP13.01□□□□□ -0.33
CAPN1-219ENST00000530495 SQLEQ14534 574 aa13.01□□□□□ -0.33
CAPN1-219ENST00000530495 CASP8Q14790 479 aa13.01□□□□□ -0.33
CAPN1-219ENST00000530495 HIKESHIQ53FT3 197 aa13.01□□□□□ -0.33
CAPN1-219ENST00000530495 OTUD3Q5T2D3 398 aaPredicted RBP13.01□□□□□ -0.33
CAPN1-219ENST00000530495 KLHL24Q6TFL4 600 aa13.01□□□□□ -0.33
CAPN1-219ENST00000530495 ABHD12BQ7Z5M8 362 aaPredicted RBP13.01□□□□□ -0.33
CAPN1-219ENST00000530495 TMEM99Q8N816 258 aa13.01□□□□□ -0.33
CAPN1-219ENST00000530495 OR9K2Q8NGE7 335 aa13.01□□□□□ -0.33
CAPN1-219ENST00000530495 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.01□□□□□ -0.33
CAPN1-219ENST00000530495 TESCQ96BS2 214 aa13.01□□□□□ -0.33
CAPN1-219ENST00000530495 ZNF385AQ96PM9 386 aaKnown RBP13.01□□□□□ -0.33
CAPN1-219ENST00000530495 TRNT1Q96Q11 434 aaKnown RBP13.01□□□□□ -0.33
CAPN1-219ENST00000530495 ADAM19Q9H013 955 aa13.01□□□□□ -0.33
CAPN1-219ENST00000530495 MTHFD2LQ9H903 347 aaPredicted RBP13.01□□□□□ -0.33
CAPN1-219ENST00000530495 MARCOQ9UEW3 520 aaPredicted RBP13.01□□□□□ -0.33
CAPN1-219ENST00000530495 PRDM4Q9UKN5 801 aa13.01□□□□□ -0.33
CAPN1-219ENST00000530495 IGHV1-18A0A0C4DH31 117 aa13□□□□□ -0.33
CAPN1-219ENST00000530495 KLF11O14901 512 aa13□□□□□ -0.33
CAPN1-219ENST00000530495 AKR7A3O95154 331 aa13□□□□□ -0.33
CAPN1-219ENST00000530495 TGFAP01135 160 aa13□□□□□ -0.33
CAPN1-219ENST00000530495 GPIP06744 558 aa13□□□□□ -0.33
CAPN1-219ENST00000530495 ZNF23P17027 643 aa13□□□□□ -0.33
CAPN1-219ENST00000530495 CDH2P19022 906 aaPredicted RBP13□□□□□ -0.33
CAPN1-219ENST00000530495 HNF1AP20823 631 aa13□□□□□ -0.33
CAPN1-219ENST00000530495 CHI3L1P36222 383 aaPredicted RBP13□□□□□ -0.33
CAPN1-219ENST00000530495 HPCAP84074 193 aa13□□□□□ -0.33
CAPN1-219ENST00000530495 CEACAM7Q14002 265 aa13□□□□□ -0.33
CAPN1-219ENST00000530495 SYPL1Q16563 259 aa13□□□□□ -0.33
CAPN1-219ENST00000530495 GSTA3Q16772 222 aa13□□□□□ -0.33
CAPN1-219ENST00000530495 ANKFN1Q8N957 763 aa13□□□□□ -0.33
CAPN1-219ENST00000530495 ZNF540Q8NDQ6 660 aa13□□□□□ -0.33
CAPN1-219ENST00000530495 C3orf49Q96BT1 292 aa13□□□□□ -0.33
CAPN1-219ENST00000530495 AURKBQ96GD4 344 aaPredicted RBP13□□□□□ -0.33
CAPN1-219ENST00000530495 SLC38A2Q96QD8 506 aa13□□□□□ -0.33
CAPN1-219ENST00000530495 VRK1Q99986 396 aaPredicted RBP13□□□□□ -0.33
CAPN1-219ENST00000530495 SLC35A5Q9BS91 424 aa13□□□□□ -0.33
CAPN1-219ENST00000530495 KATNB1Q9BVA0 655 aa13□□□□□ -0.33
CAPN1-219ENST00000530495 SLC38A1Q9H2H9 487 aa13□□□□□ -0.33
CAPN1-219ENST00000530495 CA10Q9NS85 328 aa13□□□□□ -0.33
CAPN1-219ENST00000530495 TMEM45AQ9NWC5 275 aa13□□□□□ -0.33
CAPN1-219ENST00000530495 LGALS13Q9UHV8 139 aa13□□□□□ -0.33
CAPN1-219ENST00000530495 CFAP73A6NFT4 308 aa12.99□□□□□ -0.33
CAPN1-219ENST00000530495 LIPT2A6NK58 231 aa12.99□□□□□ -0.33
CAPN1-219ENST00000530495 AQP7P3A6NL99 342 aa12.99□□□□□ -0.33
CAPN1-219ENST00000530495 B9A039 149 aa12.99□□□□□ -0.33
CAPN1-219ENST00000530495 HAX1O00165 279 aa12.99□□□□□ -0.33
CAPN1-219ENST00000530495 PDE5AO76074 875 aa12.99□□□□□ -0.33
CAPN1-219ENST00000530495 CRYAAP02489 173 aa12.99□□□□□ -0.33
CAPN1-219ENST00000530495 C1QCP02747 245 aa12.99□□□□□ -0.33
CAPN1-219ENST00000530495 RPS4Y1P22090 263 aaKnown RBP12.99□□□□□ -0.33
CAPN1-219ENST00000530495 ETV4P43268 484 aa12.99□□□□□ -0.33
CAPN1-219ENST00000530495 EPS8Q12929 822 aa12.99□□□□□ -0.33
CAPN1-219ENST00000530495 EFNB3Q15768 340 aa12.99□□□□□ -0.33
CAPN1-219ENST00000530495 ADIPOQQ15848 244 aa12.99□□□□□ -0.33
CAPN1-219ENST00000530495 C3orf36Q3SXR2 165 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms