RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 NPIPA1Q9UND3 350 aa9.34□□□□□ -0.91
MCF2-209ENST00000520602 TMEM72A0PK05 275 aa9.34□□□□□ -0.91
MCF2-209ENST00000520602 EFCAB7A8K855 629 aa9.34□□□□□ -0.91
MCF2-209ENST00000520602 INMT-MINDY4F8WBC2 141 aa9.34□□□□□ -0.91
MCF2-209ENST00000520602 PDCD5O14737 125 aa9.34□□□□□ -0.91
MCF2-209ENST00000520602 SELENOFO60613 162 aa9.34□□□□□ -0.91
MCF2-209ENST00000520602 SLC19A2O60779 497 aa9.34□□□□□ -0.91
MCF2-209ENST00000520602 EPPINO95925 133 aa9.34□□□□□ -0.91
MCF2-209ENST00000520602 OR8G3PP0DMU2 310 aa9.34□□□□□ -0.91
MCF2-209ENST00000520602 MAP3K8P41279 467 aa9.34□□□□□ -0.91
MCF2-209ENST00000520602 IRF3Q14653 427 aa9.34□□□□□ -0.91
MCF2-209ENST00000520602 GFOD2Q3B7J2 385 aa9.34□□□□□ -0.91
MCF2-209ENST00000520602 HEPHL1Q6MZM0 1159 aa9.34□□□□□ -0.91
MCF2-209ENST00000520602 C11orf88Q6PI97 169 aa9.34□□□□□ -0.91
MCF2-209ENST00000520602 SERPINA12Q8IW75 414 aa9.34□□□□□ -0.91
MCF2-209ENST00000520602 ABHD4Q8TB40 342 aa9.34□□□□□ -0.91
MCF2-209ENST00000520602 SLC46A1Q96NT5 459 aa9.34□□□□□ -0.91
MCF2-209ENST00000520602 ENKD1Q9H0I2 346 aa9.34□□□□□ -0.91
MCF2-209ENST00000520602 ASB6Q9NWX5 421 aa9.34□□□□□ -0.91
MCF2-209ENST00000520602 CKLFQ9UBR5 152 aa9.34□□□□□ -0.91
MCF2-209ENST00000520602 NUFIP1Q9UHK0 495 aaKnown RBP9.34□□□□□ -0.91
MCF2-209ENST00000520602 POU2F3Q9UKI9 436 aa9.34□□□□□ -0.91
MCF2-209ENST00000520602 GBF1Q92538 1859 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 ACOD1A6NK06 481 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 TRIM3O75382 744 aaPredicted RBP9.33□□□□□ -0.92
MCF2-209ENST00000520602 MAS1P04201 325 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 RLN1P04808 185 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 KLK3P07288 261 aaPredicted RBP9.33□□□□□ -0.92
MCF2-209ENST00000520602 FBXO45P0C2W1 286 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 RPS27P42677 84 aaKnown RBP9.33□□□□□ -0.92
MCF2-209ENST00000520602 DNASE1L1P49184 302 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 EMP2P54851 167 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 TRAM1Q15629 374 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 AGAP7PQ5VUJ5 663 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 LYSMD4Q5XG99 296 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 MAMDC2Q7Z304 686 aaPredicted RBP9.33□□□□□ -0.92
MCF2-209ENST00000520602 KDM8Q8N371 416 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 LNX2Q8N448 690 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 OR13C5Q8NGS8 318 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 BRIX1Q8TDN6 353 aaKnown RBP9.33□□□□□ -0.92
MCF2-209ENST00000520602 MR1Q95460 341 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 GDF15Q99988 308 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 LMF2Q9BU23 707 aaKnown RBP9.33□□□□□ -0.92
MCF2-209ENST00000520602 CRB3Q9BUF7 120 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 ALG12Q9BV10 488 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 DEFB126Q9BYW3 111 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 NEK6Q9HC98 313 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 SPATA2Q9UM82 520 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 SIGLEC7Q9Y286 467 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 DTX4Q9Y2E6 619 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 RNF215Q9Y6U7 377 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 KDM4EB2RXH2 506 aaPredicted RBP9.33□□□□□ -0.92
MCF2-209ENST00000520602 FNTBP49356 437 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 ZNF136P52737 540 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 AADACL4Q5VUY2 407 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 SCAIQ8N9R8 606 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 SLC2A12Q8TD20 617 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 TMEM234Q8WY98 164 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 NEDD4LQ96PU5 975 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 OR6C1Q96RD1 312 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 HCAR1Q9BXC0 346 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 MTCL1Q9Y4B5 1905 aaKnown RBP9.33□□□□□ -0.92
MCF2-209ENST00000520602 CD2P06729 351 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 MNDAP41218 407 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 ATCAYQ86WG3 371 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 TMPRSS12Q86WS5 348 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 OR4K17Q8NGC6 315 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 SDHAF3Q9NRP4 125 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 FKBP14Q9NWM8 211 aa9.33□□□□□ -0.92
MCF2-209ENST00000520602 MRPL39Q9NYK5 338 aaKnown RBP9.33□□□□□ -0.92
MCF2-209ENST00000520602 DSPPQ9NZW4 1301 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 LYRM1O43325 122 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 SNRPBP14678 240 aaKnown RBP9.32□□□□□ -0.92
MCF2-209ENST00000520602 SPNP16150 400 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 PITPNAQ00169 270 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 BAK1Q16611 211 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 LRFN4Q6PJG9 635 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 EID2Q8N6I1 236 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 ACOT12Q8WYK0 555 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 ATOH1Q92858 354 aaPredicted RBP9.32□□□□□ -0.92
MCF2-209ENST00000520602 TRMT61AQ96FX7 289 aaKnown RBP9.32□□□□□ -0.92
MCF2-209ENST00000520602 DHRS1Q96LJ7 313 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 PSD2Q9BQI7 771 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 SYT4Q9H2B2 425 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 CHST2Q9Y4C5 530 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 A0A0B4J2E0 115 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 A0A1B0GX12 115 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 BLACEA4D250 179 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 A6NCN8 305 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 ZIC2O95409 532 aaPredicted RBP9.32□□□□□ -0.92
MCF2-209ENST00000520602 CD3GP09693 182 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 ADH7P40394 386 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 ZNF41P51814 821 aaPredicted RBP9.32□□□□□ -0.92
MCF2-209ENST00000520602 CLDN12P56749 244 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 SIRPAP78324 504 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 E2F1Q01094 437 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 GALEQ14376 348 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 KLHL24Q6TFL4 600 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 WDR88Q6ZMY6 472 aa9.32□□□□□ -0.92
MCF2-209ENST00000520602 QSOX2Q6ZRP7 698 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms