RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 C1orf140Q5VVS0 124 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 RINLQ6ZS11 566 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 FAM214BQ7L5A3 538 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 RBM45Q8IUH3 476 aaKnown RBP12.75□□□□□ -0.37
NUP54-216ENST00000514901 GCNT2Q8N0V5 402 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 CNEP1R1Q8N9A8 125 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 OR4D11Q8NGI4 311 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 GEMIN6Q8WXD5 167 aaKnown RBP12.75□□□□□ -0.37
NUP54-216ENST00000514901 MPP4Q96JB8 637 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 EPYCQ99645 322 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 UCK2Q9BZX2 261 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 DCAF13Q9NV06 445 aaKnown RBP12.75□□□□□ -0.37
NUP54-216ENST00000514901 TAS2R1Q9NYW7 299 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 KLHL9Q9P2J3 617 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 PLEKHB1Q9UF11 243 aaPredicted RBP12.75□□□□□ -0.37
NUP54-216ENST00000514901 FOXD3Q9UJU5 478 aaPredicted RBP12.75□□□□□ -0.37
NUP54-216ENST00000514901 HECTD1Q9ULT8 2610 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 PRPF19Q9UMS4 504 aaKnown RBP12.75□□□□□ -0.37
NUP54-216ENST00000514901 SAMD4AQ9UPU9 718 aaKnown RBP12.75□□□□□ -0.37
NUP54-216ENST00000514901 SNX13Q9Y5W8 968 aa12.75□□□□□ -0.37
NUP54-216ENST00000514901 A1L4Q6 167 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 LIPT2A6NK58 231 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 CPSF4LA6NMK7 179 aaKnown RBP12.74□□□□□ -0.37
NUP54-216ENST00000514901 PRSS44E7EML9 344 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 MSTNO14793 375 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 CHP2O43745 196 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 TNFSF13O75888 250 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 ATP5HO75947 161 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 OR5F1O95221 314 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 AHSA1O95433 338 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 THRBP10828 461 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 IMPDH2P12268 514 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 NCK1P16333 377 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 TCN1P20061 433 aaPredicted RBP12.74□□□□□ -0.37
NUP54-216ENST00000514901 ASCL1P50553 236 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 TAS2R41P59536 307 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 H3F3AP84243 136 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 RASGEF1BQ0VAM2 473 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 CEACAM7Q14002 265 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 MFSD13AQ14CX5 517 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 CDSNQ15517 529 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 FBXL19-AS1Q494R0 122 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 IFI44LQ53G44 452 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 TMEM201Q5SNT2 666 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 PAQR6Q6TCH4 344 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 FKBP9P1Q75LS8 142 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 OR6S1Q8NH40 331 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 MFSD8Q8NHS3 518 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 PIGXQ8TBF5 258 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 RNF217Q8TC41 542 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 ADAMTS16Q8TE57 1224 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 STARD4Q96DR4 205 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 TMEM43Q9BTV4 400 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 MUC13Q9H3R2 512 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 JKAMPQ9P055 326 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 PACSIN3Q9UKS6 424 aa12.74□□□□□ -0.37
NUP54-216ENST00000514901 ADGRG4Q8IZF6 3080 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 PKDREJQ9NTG1 2253 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 TRAV36DV7A0A075B6V5 113 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 ZNF724A8MTY0 619 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 SMAD9O15198 467 aaKnown RBP12.73□□□□□ -0.37
NUP54-216ENST00000514901 GYG2O15488 501 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 IFNW1P05000 195 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 YES1P07947 543 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 CD8BP10966 210 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 FPR1P21462 350 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 PEX19P40855 299 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 OR1E2P47887 323 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 RASSF2P50749 326 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 EGR4Q05215 589 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 TFF3Q07654 80 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 OR7A5Q15622 319 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 DNAL1Q4LDG9 190 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 LINC00114Q6XXX2 140 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 DEF8Q6ZN54 512 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 VTCN1Q7Z7D3 282 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 RELL2Q8NC24 303 aaPredicted RBP12.73□□□□□ -0.37
NUP54-216ENST00000514901 FAM156AQ8NDB6 213 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 OR6K3Q8NGY3 331 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 ABHD3Q8WU67 409 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 POP5Q969H6 163 aaKnown RBP12.73□□□□□ -0.37
NUP54-216ENST00000514901 SLC41A3Q96GZ6 507 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 HSH2DQ96JZ2 352 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 NSMCE2Q96MF7 247 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 SLC19A3Q9BZV2 496 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 BCO1Q9HAY6 547 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 PLSCR4Q9NRQ2 329 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 EMC3Q9P0I2 261 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 KLHL13Q9P2N7 655 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 RIMS3Q9UJD0 308 aa12.73□□□□□ -0.37
NUP54-216ENST00000514901 ASH1LQ9NR48 2969 aaKnown RBP12.72□□□□□ -0.37
NUP54-216ENST00000514901 UTP20O75691 2785 aaKnown RBP12.72□□□□□ -0.37
NUP54-216ENST00000514901 IGHV3-15A0A0B4J1V0 119 aa12.72□□□□□ -0.37
NUP54-216ENST00000514901 NKX2-6A6NCS4 301 aa12.72□□□□□ -0.37
NUP54-216ENST00000514901 EEF1E1-BLOC1S5C9J1V9 151 aa12.72□□□□□ -0.37
NUP54-216ENST00000514901 GPR171O14626 319 aa12.72□□□□□ -0.37
NUP54-216ENST00000514901 EEF1E1O43324 174 aaKnown RBP12.72□□□□□ -0.37
NUP54-216ENST00000514901 VAMP5O95183 116 aa12.72□□□□□ -0.37
NUP54-216ENST00000514901 TNFRSF1BP20333 461 aa12.72□□□□□ -0.37
NUP54-216ENST00000514901 PCYT1AP49585 367 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms