RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 TMEM43Q9BTV4 400 aa13.43□□□□□ -0.26
NUP54-213ENST00000513352 SRXN1Q9BYN0 137 aa13.43□□□□□ -0.26
NUP54-213ENST00000513352 POTEKPQ9BYX7 375 aa13.43□□□□□ -0.26
NUP54-213ENST00000513352 MCTS1Q9ULC4 181 aaKnown RBP13.43□□□□□ -0.26
NUP54-213ENST00000513352 ARHGAP21Q5T5U3 1957 aa13.43□□□□□ -0.26
NUP54-213ENST00000513352 POLEQ07864 2286 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 MYO7BQ6PIF6 2116 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 IGHV3-15A0A0B4J1V0 119 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 SLC22A20A6NK97 555 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 GNGT2O14610 69 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 PIP5K1CO60331 668 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 PRSS23O95084 383 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 PMS2P2O95744 297 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 CST1P01037 141 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 STSP08842 583 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 HOXD4P09016 255 aaPredicted RBP13.42□□□□□ -0.26
NUP54-213ENST00000513352 HOXB6P17509 224 aaKnown RBP13.42□□□□□ -0.26
NUP54-213ENST00000513352 FPR1P21462 350 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 FUT4P22083 530 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 ENPP1P22413 925 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 PTGER4P35408 488 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 RBM34P42696 430 aaKnown RBP13.42□□□□□ -0.26
NUP54-213ENST00000513352 MAGEA2P43356 314 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 UGT2B15P54855 530 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 EGR4Q05215 589 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 IQCCQ4KMZ1 466 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 B3GNT6Q6ZMB0 384 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 PIWIL3Q7Z3Z3 882 aaKnown RBP13.42□□□□□ -0.26
NUP54-213ENST00000513352 FJX1Q86VR8 437 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 RPRMLQ8N4K4 120 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 PIK3C3Q8NEB9 887 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 PFN4Q8NHR9 129 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 ROBO4Q8WZ75 1007 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 HS6ST2Q96MM7 605 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 PRSS27Q9BQR3 290 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 MAN2C1Q9NTJ4 1040 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 CCM2LQ9NUG4 571 aaPredicted RBP13.42□□□□□ -0.26
NUP54-213ENST00000513352 MED31Q9Y3C7 131 aa13.42□□□□□ -0.26
NUP54-213ENST00000513352 PHF3Q92576 2039 aaKnown RBP13.41□□□□□ -0.26
NUP54-213ENST00000513352 A0A1W2PRQ8 180 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 ENO4A6NNW6 628 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 KDM4EB2RXH2 506 aaPredicted RBP13.41□□□□□ -0.26
NUP54-213ENST00000513352 TNFRSF11BO00300 401 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 TIPRLO75663 272 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 IMPDH2P12268 514 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 PER3P56645 1201 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 RAC3P60763 192 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 ACTR3P61158 418 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 SLC35A1P78382 337 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 IL1RL1Q01638 556 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 DGCR6Q14129 220 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 ZNF239Q16600 458 aaKnown RBP13.41□□□□□ -0.26
NUP54-213ENST00000513352 FAM69AQ5T7M9 428 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 NSUN5P2Q63ZY6 315 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 OR2T5Q6IEZ7 315 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 PODNL1Q6PEZ8 512 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 LINC00114Q6XXX2 140 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 NCCRP1Q6ZVX7 275 aaPredicted RBP13.41□□□□□ -0.26
NUP54-213ENST00000513352 MCEMP1Q8IX19 187 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 OR2T29Q8NH02 315 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 FNDC9Q8TBE3 224 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 PYDC1Q8WXC3 89 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 ACOT11Q8WXI4 607 aaPredicted RBP13.41□□□□□ -0.26
NUP54-213ENST00000513352 TAAR8Q969N4 342 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 SLCO4A1Q96BD0 722 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 KLHL4Q9C0H6 718 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 ANKRD19PQ9H560 264 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 DENND2DQ9H6A0 471 aaPredicted RBP13.41□□□□□ -0.26
NUP54-213ENST00000513352 REEP1Q9H902 201 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 TMCC3Q9ULS5 477 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 AP4S1Q9Y587 144 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 FAM215AQ9Y5M1 114 aa13.41□□□□□ -0.26
NUP54-213ENST00000513352 TRBV4-1A0A0J9YWV2 114 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 A0A1B0GUH1 482 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 LIPT2A6NK58 231 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 E9PLN8 166 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 LRRTM2O43300 516 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 OR2T1O43869 369 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 NPIPB7O75200 414 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 AKR7A3O95154 331 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 CH25HO95992 272 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 PLGP00747 810 aaPredicted RBP13.4□□□□□ -0.26
NUP54-213ENST00000513352 FCGR2AP12318 317 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 IFI30P13284 250 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 PLA2G2AP14555 144 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 NUP107P57740 925 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 PMPCAQ10713 525 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 PPP1R8Q12972 351 aaKnown RBP13.4□□□□□ -0.26
NUP54-213ENST00000513352 EXOC3L2Q2M3D2 409 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 RTL6Q6ICC9 239 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 TMEM211Q6ICI0 200 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 TBPL2Q6SJ96 375 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 NRMQ8IXM6 262 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 MFSD8Q8NHS3 518 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 STMN2Q93045 179 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 SGTBQ96EQ0 304 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 DHRS1Q96LJ7 313 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 UCN2Q96RP3 112 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 VKORC1Q9BQB6 163 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 NAA11Q9BSU3 229 aaPredicted RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms