RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 MAMDC2Q7Z304 686 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 OR13C5Q8NGS8 318 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 BADQ92934 168 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 ARSGQ96EG1 525 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 PELOQ9BRX2 385 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 ALG12Q9BV10 488 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 GPR174Q9BXC1 333 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 SLC38A1Q9H2H9 487 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 EVA1AQ9H8M9 152 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 MEPEQ9NQ76 525 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 OR2S2Q9NQN1 319 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 POT1Q9NUX5 634 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 QPCTLQ9NXS2 382 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 SPHK1Q9NYA1 384 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 KCND3Q9UK17 655 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 COPS3Q9UNS2 423 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 HCFC2Q9Y5Z7 792 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 A0A0B4J203 849 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 A0A0J9YY10 115 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 ZNF726A6NNF4 738 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 GJA4P35212 333 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 VASPP50552 380 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 HHEXQ03014 270 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 LHX8Q68G74 356 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 C12orf40Q86WS4 652 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 ZNF680Q8NEM1 530 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 OR4Q3Q8NH05 313 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 SLC2A12Q8TD20 617 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 LMX1AQ8TE12 382 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 KLHDC7BQ96G42 594 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 DDOQ99489 341 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 CA5BQ9Y2D0 317 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 MAGEB4O15481 346 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 F13BP05160 661 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 ITGA5P08648 1049 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 NID1P14543 1247 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 P2RX3P56373 397 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 CCINQ13939 588 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 FAM189A2Q15884 450 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 ARHGAP11BQ3KRB8 267 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 C1QTNF12Q5T7M4 302 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 OR9A4Q8NGU2 314 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 UCN3Q969E3 161 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 FAM46BQ96A09 425 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 GSX2Q9BZM3 304 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 LIN7BQ9HAP6 207 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 PRDM9Q9NQV7 894 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 SERINC1Q9NRX5 453 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 NPC1O15118 1278 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 CHP2O43745 196 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 IFNA21P01568 189 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 MAKP20794 623 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 HNRNPA2B1P22626 353 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 SLC6A9P48067 706 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 RBMS2Q15434 407 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 C12orf45Q8N5I9 185 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 SIRT6Q8N6T7 355 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 AMER3Q8N944 861 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 ZNF511Q8NB15 262 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 RBPMSQ93062 196 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 POLE3Q9NRF9 147 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 SDHAF3Q9NRP4 125 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 GPATCH2Q9NW75 528 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 NCDNQ9UBB6 729 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 CBLCQ9ULV8 474 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 A0A0A6YYD5 115 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 MEGF11A6BM72 1044 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 ZNF736B4DX44 427 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 SRPX2O60687 465 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 LILRB3O75022 631 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 SEMG1P04279 462 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 ZNF806P0C7X5 589 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 RORAP35398 523 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 AQP2P41181 271 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 RFX2P48378 723 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 PCBP4P57723 403 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 SORDQ00796 357 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 Q499Y3 187 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 GXYLT1Q4G148 440 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 ZNF628Q5EBL2 1059 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 AVL9Q8NBF6 648 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 OR2A1Q8NGT9 310 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 NEK7Q8TDX7 302 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 DUSP19Q8WTR2 217 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 MIXL1Q9H2W2 232 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 SAV1Q9H4B6 383 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 CYSLTR2Q9NS75 346 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 POLR2AP24928 1970 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 TCRBV21S2A2A0A5A6 115 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 SELENOFO60613 162 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 TBX19O60806 448 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 CXCL10P02778 98 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 THBS1P07996 1170 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 UBL4AP11441 157 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 CD53P19397 219 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 CEBPGP53567 150 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 AGERQ15109 404 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 ARSKQ6UWY0 536 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 GSG1LQ6UXU4 331 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 CD300LDQ6UXZ3 194 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms