RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 ADAM5Q6NVV9 412 aa13.9□□□□□ -0.18
HDAC4-213ENST00000496347 MSRB3Q8IXL7 192 aa13.9□□□□□ -0.18
HDAC4-213ENST00000496347 CADM2Q8N3J6 435 aa13.9□□□□□ -0.18
HDAC4-213ENST00000496347 IGFBPL1Q8WX77 278 aa13.9□□□□□ -0.18
HDAC4-213ENST00000496347 MAL2Q969L2 176 aa13.9□□□□□ -0.18
HDAC4-213ENST00000496347 NAA11Q9BSU3 229 aaPredicted RBP13.9□□□□□ -0.18
HDAC4-213ENST00000496347 GSX2Q9BZM3 304 aa13.9□□□□□ -0.18
HDAC4-213ENST00000496347 CXorf56Q9H5V9 222 aa13.9□□□□□ -0.18
HDAC4-213ENST00000496347 SLC52A3Q9NQ40 469 aa13.9□□□□□ -0.18
HDAC4-213ENST00000496347 TRIM33Q9UPN9 1127 aa13.9□□□□□ -0.18
HDAC4-213ENST00000496347 A0A1W2PP18 115 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 LIPT2A6NK58 231 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 MRPL33O75394 65 aaKnown RBP13.89□□□□□ -0.19
HDAC4-213ENST00000496347 PGM3O95394 542 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 CD3EP07766 207 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 ARAFP10398 606 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 IMPDH2P12268 514 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 PAX1P15863 534 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 NCF2P19878 526 aaPredicted RBP13.89□□□□□ -0.19
HDAC4-213ENST00000496347 IGHV1-2P23083 117 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 PRKAR1BP31321 381 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 CAPRIN1Q14444 709 aaKnown RBP13.89□□□□□ -0.19
HDAC4-213ENST00000496347 AGKQ53H12 422 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 ZNF311Q5JNZ3 666 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 PRSS57Q6UWY2 283 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 CASP12Q6UXS9 341 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 SERPINA11Q86U17 422 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 KRT73Q86Y46 540 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 P3H2Q8IVL5 708 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 CLIP4Q8N3C7 705 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 ZNF611Q8N823 705 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 MUCL1Q96DR8 90 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 PIF1Q9H611 641 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 TMEM38AQ9H6F2 299 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 ASB6Q9NWX5 421 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 TAS2R16Q9NYV7 291 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 VAPAQ9P0L0 249 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 CHST2Q9Y4C5 530 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 FLVCR1Q9Y5Y0 555 aa13.89□□□□□ -0.19
HDAC4-213ENST00000496347 OR5H1A6NKK0 313 aa13.88□□□□□ -0.19
HDAC4-213ENST00000496347 AQP7P3A6NL99 342 aa13.88□□□□□ -0.19
HDAC4-213ENST00000496347 A8MVM7 634 aa13.88□□□□□ -0.19
HDAC4-213ENST00000496347 TMEM229AB2RXF0 380 aa13.88□□□□□ -0.19
HDAC4-213ENST00000496347 FRS3O43559 492 aa13.88□□□□□ -0.19
HDAC4-213ENST00000496347 RAMP1O60894 148 aa13.88□□□□□ -0.19
HDAC4-213ENST00000496347 ADSLP30566 484 aaPredicted RBP13.88□□□□□ -0.19
HDAC4-213ENST00000496347 SLC17A1Q14916 467 aa13.88□□□□□ -0.19
HDAC4-213ENST00000496347 PPA1Q15181 289 aa13.88□□□□□ -0.19
HDAC4-213ENST00000496347 STK11Q15831 433 aa13.88□□□□□ -0.19
HDAC4-213ENST00000496347 NCMAPQ5T1S8 102 aa13.88□□□□□ -0.19
HDAC4-213ENST00000496347 REEP3Q6NUK4 255 aa13.88□□□□□ -0.19
HDAC4-213ENST00000496347 C6orf89Q6UWU4 347 aa13.88□□□□□ -0.19
HDAC4-213ENST00000496347 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.88□□□□□ -0.19
HDAC4-213ENST00000496347 CCDC103Q8IW40 242 aa13.88□□□□□ -0.19
HDAC4-213ENST00000496347 UBE2J2Q8N2K1 259 aa13.88□□□□□ -0.19
HDAC4-213ENST00000496347 ZNF433Q8N7K0 673 aaPredicted RBP13.88□□□□□ -0.19
HDAC4-213ENST00000496347 C1orf162Q8NEQ5 155 aaPredicted RBP13.88□□□□□ -0.19
HDAC4-213ENST00000496347 TMEM171Q8WVE6 324 aa13.88□□□□□ -0.19
HDAC4-213ENST00000496347 AKAP1Q92667 903 aaKnown RBP eCLIP13.88□□□□□ -0.19
HDAC4-213ENST00000496347 TMEM45BQ96B21 275 aa13.88□□□□□ -0.19
HDAC4-213ENST00000496347 C3orf49Q96BT1 292 aa13.88□□□□□ -0.19
HDAC4-213ENST00000496347 ZNF775Q96BV0 537 aaPredicted RBP13.88□□□□□ -0.19
HDAC4-213ENST00000496347 DNAJA3Q96EY1 480 aa13.88□□□□□ -0.19
HDAC4-213ENST00000496347 SPATA5L1Q9BVQ7 753 aa13.88□□□□□ -0.19
HDAC4-213ENST00000496347 SF3B5Q9BWJ5 86 aaKnown RBP13.88□□□□□ -0.19
HDAC4-213ENST00000496347 ZNF385DQ9H6B1 395 aa13.88□□□□□ -0.19
HDAC4-213ENST00000496347 PARPBPQ9NWS1 579 aa13.88□□□□□ -0.19
HDAC4-213ENST00000496347 EDF1O60869 148 aaKnown RBP13.87□□□□□ -0.19
HDAC4-213ENST00000496347 NPIPB7O75200 414 aa13.87□□□□□ -0.19
HDAC4-213ENST00000496347 PRG2P13727 222 aa13.87□□□□□ -0.19
HDAC4-213ENST00000496347 GPX2P18283 190 aa13.87□□□□□ -0.19
HDAC4-213ENST00000496347 CDK6Q00534 326 aa13.87□□□□□ -0.19
HDAC4-213ENST00000496347 BSPH1Q075Z2 132 aa13.87□□□□□ -0.19
HDAC4-213ENST00000496347 OR7A5Q15622 319 aa13.87□□□□□ -0.19
HDAC4-213ENST00000496347 PAGE3Q5JUK9 113 aa13.87□□□□□ -0.19
HDAC4-213ENST00000496347 OTUD3Q5T2D3 398 aaPredicted RBP13.87□□□□□ -0.19
HDAC4-213ENST00000496347 C1QTNF12Q5T7M4 302 aa13.87□□□□□ -0.19
HDAC4-213ENST00000496347 OR7E24Q6IFN5 339 aa13.87□□□□□ -0.19
HDAC4-213ENST00000496347 ALKBH2Q6NS38 261 aa13.87□□□□□ -0.19
HDAC4-213ENST00000496347 DHRS4L2Q6PKH6 230 aa13.87□□□□□ -0.19
HDAC4-213ENST00000496347 ATG4DQ86TL0 474 aaPredicted RBP13.87□□□□□ -0.19
HDAC4-213ENST00000496347 BHLHE22Q8NFJ8 381 aaPredicted RBP13.87□□□□□ -0.19
HDAC4-213ENST00000496347 OR9K2Q8NGE7 335 aa13.87□□□□□ -0.19
HDAC4-213ENST00000496347 NFKBIDQ8NI38 313 aa13.87□□□□□ -0.19
HDAC4-213ENST00000496347 STK35Q8TDR2 534 aa13.87□□□□□ -0.19
HDAC4-213ENST00000496347 FBXW5Q969U6 566 aa13.87□□□□□ -0.19
HDAC4-213ENST00000496347 PERPQ96FX8 193 aa13.87□□□□□ -0.19
HDAC4-213ENST00000496347 CPPED1Q9BRF8 314 aaPredicted RBP13.87□□□□□ -0.19
HDAC4-213ENST00000496347 TAPBPLQ9BX59 468 aa13.87□□□□□ -0.19
HDAC4-213ENST00000496347 AMBRA1Q9C0C7 1298 aa13.87□□□□□ -0.19
HDAC4-213ENST00000496347 C12orf10Q9HB07 376 aa13.87□□□□□ -0.19
HDAC4-213ENST00000496347 SLAMF8Q9P0V8 285 aa13.87□□□□□ -0.19
HDAC4-213ENST00000496347 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.87□□□□□ -0.19
HDAC4-213ENST00000496347 LEF1Q9UJU2 399 aaPredicted RBP13.87□□□□□ -0.19
HDAC4-213ENST00000496347 PRORSD1PA6NEY8 169 aa13.86□□□□□ -0.19
HDAC4-213ENST00000496347 EVPLLA8MZ36 301 aa13.86□□□□□ -0.19
HDAC4-213ENST00000496347 PDLIM1O00151 329 aa13.86□□□□□ -0.19
HDAC4-213ENST00000496347 ANGPT2O15123 496 aa13.86□□□□□ -0.19
HDAC4-213ENST00000496347 CLOCKO15516 846 aa13.86□□□□□ -0.19
HDAC4-213ENST00000496347 FZD7O75084 574 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms