RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 TRAF3IP3Q9Y228 551 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 NEUROG3Q9Y4Z2 214 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 GTF3C1Q12789 2109 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 MBLAC1A4D2B0 266 aaPredicted RBP2.2□□□□□ -2.06
VPS50-219ENST00000495039 A6NIZ1 184 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 IDSB3KWA1 339 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 NDC80O14777 642 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 UGT1A9O60656 530 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 PFKFB2O60825 505 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 INSP01308 110 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 HSMCR30P0CW71 290 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 PNMTP11086 282 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 PSG2P11465 335 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 CCDC130P13994 396 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 RPS2P15880 293 aaKnown RBP2.2□□□□□ -2.06
VPS50-219ENST00000495039 HNRNPA2B1P22626 353 aaKnown RBP2.2□□□□□ -2.06
VPS50-219ENST00000495039 MMP11P24347 488 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 GCAP28676 217 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 HTR1FP30939 366 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 SHMT2P34897 504 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 PTGDSP41222 190 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 CSNK1DP48730 415 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 KLK7P49862 253 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 KPNA2P52292 529 aaKnown RBP2.2□□□□□ -2.06
VPS50-219ENST00000495039 PKNOX1P55347 436 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 TAS2R19P59542 299 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 RAP1BP61224 184 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 CASC10Q5T4H9 136 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 TIGD3Q6B0B8 471 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 CYB5R2Q6BCY4 276 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 TMEM225Q6GV28 225 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 CES3Q6UWW8 571 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 TMIGD1Q6UXZ0 262 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 CCDC80Q76M96 950 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 CCDC65Q8IXS2 484 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 SLC35F2Q8IXU6 374 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 ZNF683Q8IZ20 524 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 FAM71E2Q8N5Q1 922 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 ANKFN1Q8N957 763 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 CATSPER1Q8NEC5 780 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 OR4D5Q8NGN0 318 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 PIGCQ92535 297 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 RAB7BQ96AH8 199 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 TTC25Q96NG3 672 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 TGM7Q96PF1 710 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 KCNA7Q96RP8 456 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 RASL11BQ9BPW5 248 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 SLC25A39Q9BZJ4 359 aaPredicted RBP2.2□□□□□ -2.06
VPS50-219ENST00000495039 RAB33BQ9H082 229 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 SUDS3Q9H7L9 328 aaPredicted RBP2.2□□□□□ -2.06
VPS50-219ENST00000495039 RMND5AQ9H871 391 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 ZNF331Q9NQX6 463 aaPredicted RBP2.2□□□□□ -2.06
VPS50-219ENST00000495039 MRPS33Q9Y291 106 aaKnown RBP2.2□□□□□ -2.06
VPS50-219ENST00000495039 PLEKHH1Q9ULM0 1364 aa2.2□□□□□ -2.06
VPS50-219ENST00000495039 IGKV1D-8A0A087WSZ0 117 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 IGHV1OR21-1A0A087WYE8 117 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 A6NDX4 124 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 F5H6K3 240 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 K7EQM0 130 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 TRAF3IP2O43734 574 aaPredicted RBP2.19□□□□□ -2.06
VPS50-219ENST00000495039 FAM189A1O60320 539 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 WISP3O95389 354 aaPredicted RBP2.19□□□□□ -2.06
VPS50-219ENST00000495039 AP2A1O95782 977 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 GIPP09681 153 aaPredicted RBP2.19□□□□□ -2.06
VPS50-219ENST00000495039 TOP1P11387 765 aaKnown RBP2.19□□□□□ -2.06
VPS50-219ENST00000495039 HNF1AP20823 631 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 CCNCP24863 283 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 CXCR2P25025 360 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 LAP3P28838 519 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 OTX2P32243 289 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 KIR2DS4P43632 304 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 RPS10P46783 165 aaKnown RBP2.19□□□□□ -2.06
VPS50-219ENST00000495039 KLRC3Q07444 240 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 GANABQ14697 944 aaKnown RBP2.19□□□□□ -2.06
VPS50-219ENST00000495039 NRF1Q16656 503 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 SAMD4BQ5PRF9 694 aaKnown RBP2.19□□□□□ -2.06
VPS50-219ENST00000495039 C1orf100Q5SVJ3 147 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 GPRC6AQ5T6X5 926 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 TTC23Q5W5X9 447 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 SLC25A24Q6NUK1 477 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 C6orf223Q8N319 242 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 ZNF433Q8N7K0 673 aaPredicted RBP2.19□□□□□ -2.06
VPS50-219ENST00000495039 ARIH2OSQ8N7S6 290 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 Q8N9W7 124 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 OR10G3Q8NGC4 313 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 OR4K14Q8NGD5 310 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 BLOC1S5Q8TDH9 187 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 RLN3Q8WXF3 142 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 FGF11Q92914 225 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 PAGE5Q96GU1 130 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 ZNF607Q96SK3 696 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 P2RY13Q9BPV8 354 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 RAB34Q9BZG1 259 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 PATZ1Q9HBE1 687 aaKnown RBP2.19□□□□□ -2.06
VPS50-219ENST00000495039 PIPOXQ9P0Z9 390 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 CGNQ9P2M7 1197 aaKnown RBP2.19□□□□□ -2.06
VPS50-219ENST00000495039 ZNF225Q9UK10 706 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 STAP1Q9ULZ2 295 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 PNPLA6Q8IY17 1366 aa2.19□□□□□ -2.06
VPS50-219ENST00000495039 TRBV6-6A0A0A6YYG2 114 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms