RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 STK11Q15831 433 aa29.36■■■□□ 2.29
CBX4-203ENST00000494546 FBXW9Q5XUX1 488 aa29.36■■■□□ 2.29
CBX4-203ENST00000494546 PAQR6Q6TCH4 344 aa29.36■■■□□ 2.29
CBX4-203ENST00000494546 DHDDSQ86SQ9 333 aa29.36■■■□□ 2.29
CBX4-203ENST00000494546 KRT73Q86Y46 540 aa29.36■■■□□ 2.29
CBX4-203ENST00000494546 PIGTQ969N2 578 aa29.36■■■□□ 2.29
CBX4-203ENST00000494546 C3orf49Q96BT1 292 aa29.36■■■□□ 2.29
CBX4-203ENST00000494546 CCL19Q99731 98 aa29.36■■■□□ 2.29
CBX4-203ENST00000494546 USB1Q9BQ65 265 aaKnown RBP29.36■■■□□ 2.29
CBX4-203ENST00000494546 TMUB1Q9BVT8 246 aa29.36■■■□□ 2.29
CBX4-203ENST00000494546 LIPT2A6NK58 231 aa29.35■■■□□ 2.29
CBX4-203ENST00000494546 A8MVM7 634 aa29.35■■■□□ 2.29
CBX4-203ENST00000494546 SLC6A2P23975 617 aa29.35■■■□□ 2.29
CBX4-203ENST00000494546 PRKAR1BP31321 381 aa29.35■■■□□ 2.29
CBX4-203ENST00000494546 NTF4P34130 210 aa29.35■■■□□ 2.29
CBX4-203ENST00000494546 RUNDC3AQ59EK9 446 aa29.35■■■□□ 2.29
CBX4-203ENST00000494546 OTUD3Q5T2D3 398 aaPredicted RBP29.35■■■□□ 2.29
CBX4-203ENST00000494546 C20orf204Q6ZNR8 217 aa29.35■■■□□ 2.29
CBX4-203ENST00000494546 SPATA5L1Q9BVQ7 753 aa29.35■■■□□ 2.29
CBX4-203ENST00000494546 TAPBPLQ9BX59 468 aa29.35■■■□□ 2.29
CBX4-203ENST00000494546 TMEM38AQ9H6F2 299 aa29.35■■■□□ 2.29
CBX4-203ENST00000494546 NGBQ9NPG2 151 aa29.35■■■□□ 2.29
CBX4-203ENST00000494546 ZNF446Q9NWS9 450 aa29.35■■■□□ 2.29
CBX4-203ENST00000494546 AKR7A3O95154 331 aa29.34■■■□□ 2.29
CBX4-203ENST00000494546 COX5AP20674 150 aa29.34■■■□□ 2.29
CBX4-203ENST00000494546 CASP12Q6UXS9 341 aa29.34■■■□□ 2.29
CBX4-203ENST00000494546 RETREG3Q86VR2 466 aa29.34■■■□□ 2.29
CBX4-203ENST00000494546 TMEM99Q8N816 258 aa29.34■■■□□ 2.29
CBX4-203ENST00000494546 SLC35B4Q969S0 331 aa29.34■■■□□ 2.29
CBX4-203ENST00000494546 TMEM120AQ9BXJ8 343 aa29.34■■■□□ 2.29
CBX4-203ENST00000494546 RSPO3Q9BXY4 272 aaPredicted RBP29.34■■■□□ 2.29
CBX4-203ENST00000494546 RPS6KB2Q9UBS0 482 aa29.34■■■□□ 2.29
CBX4-203ENST00000494546 SLC9A8Q9Y2E8 581 aa29.34■■■□□ 2.29
CBX4-203ENST00000494546 ITPR3Q14573 2671 aa29.34■■■□□ 2.29
CBX4-203ENST00000494546 SMPD2O60906 423 aa29.33■■■□□ 2.29
CBX4-203ENST00000494546 AQP1P29972 269 aa29.33■■■□□ 2.29
CBX4-203ENST00000494546 FOXD4Q12950 439 aaPredicted RBP29.33■■■□□ 2.29
CBX4-203ENST00000494546 C1orf140Q5VVS0 124 aa29.33■■■□□ 2.29
CBX4-203ENST00000494546 ATG4DQ86TL0 474 aaPredicted RBP29.33■■■□□ 2.29
CBX4-203ENST00000494546 DPP10Q8N608 796 aa29.33■■■□□ 2.29
CBX4-203ENST00000494546 PIP5K1AQ99755 562 aa29.33■■■□□ 2.29
CBX4-203ENST00000494546 ADPRHL2Q9NX46 363 aa29.33■■■□□ 2.29
CBX4-203ENST00000494546 FLVCR1Q9Y5Y0 555 aa29.33■■■□□ 2.29
CBX4-203ENST00000494546 GGT1P19440 569 aa29.32■■■□□ 2.28
CBX4-203ENST00000494546 NKX6-1P78426 367 aaPredicted RBP29.32■■■□□ 2.28
CBX4-203ENST00000494546 SLC17A1Q14916 467 aa29.32■■■□□ 2.28
CBX4-203ENST00000494546 ADRM1Q16186 407 aa29.32■■■□□ 2.28
CBX4-203ENST00000494546 METTL21CQ5VZV1 264 aa29.32■■■□□ 2.28
CBX4-203ENST00000494546 DHRS4L2Q6PKH6 230 aa29.32■■■□□ 2.28
CBX4-203ENST00000494546 COMTD1Q86VU5 262 aa29.32■■■□□ 2.28
CBX4-203ENST00000494546 ZNF433Q8N7K0 673 aaPredicted RBP29.32■■■□□ 2.28
CBX4-203ENST00000494546 WFDC11Q8NEX6 87 aa29.32■■■□□ 2.28
CBX4-203ENST00000494546 ZNF607Q96SK3 696 aa29.32■■■□□ 2.28
CBX4-203ENST00000494546 CGREF1Q99674 301 aa29.32■■■□□ 2.28
CBX4-203ENST00000494546 TMEM204Q9BSN7 226 aa29.32■■■□□ 2.28
CBX4-203ENST00000494546 ESRP2Q9H6T0 727 aaKnown RBP29.32■■■□□ 2.28
CBX4-203ENST00000494546 ASB6Q9NWX5 421 aa29.32■■■□□ 2.28
CBX4-203ENST00000494546 PRR14LQ5THK1 2151 aa29.31■■■□□ 2.28
CBX4-203ENST00000494546 TPST1O60507 370 aa29.31■■■□□ 2.28
CBX4-203ENST00000494546 TROVE2P10155 538 aaKnown RBP eCLIP29.31■■■□□ 2.28
CBX4-203ENST00000494546 MTPNP58546 118 aa29.31■■■□□ 2.28
CBX4-203ENST00000494546 SF3A3Q12874 501 aaKnown RBP eCLIP29.31■■■□□ 2.283e-6■■■■■ 27.2
CBX4-203ENST00000494546 NFYCQ13952 458 aa29.31■■■□□ 2.28
CBX4-203ENST00000494546 PPA1Q15181 289 aa29.31■■■□□ 2.28
CBX4-203ENST00000494546 GLIPR1L2Q4G1C9 344 aa29.31■■■□□ 2.28
CBX4-203ENST00000494546 HIPK4Q8NE63 616 aa29.31■■■□□ 2.28
CBX4-203ENST00000494546 TSPEARQ8WU66 669 aa29.31■■■□□ 2.28
CBX4-203ENST00000494546 ANKRD27Q96NW4 1050 aa29.31■■■□□ 2.28
CBX4-203ENST00000494546 PARPBPQ9NWS1 579 aa29.31■■■□□ 2.28
CBX4-203ENST00000494546 ANGPT4Q9Y264 503 aa29.31■■■□□ 2.28
CBX4-203ENST00000494546 CIB4A0PJX0 185 aa29.3■■■□□ 2.28
CBX4-203ENST00000494546 AQP7P3A6NL99 342 aa29.3■■■□□ 2.28
CBX4-203ENST00000494546 CCT8L1PA6NM43 557 aa29.3■■■□□ 2.28
CBX4-203ENST00000494546 TMEM229AB2RXF0 380 aa29.3■■■□□ 2.28
CBX4-203ENST00000494546 CLOCKO15516 846 aa29.3■■■□□ 2.28
CBX4-203ENST00000494546 RAD51DO75771 328 aa29.3■■■□□ 2.28
CBX4-203ENST00000494546 HOXC12P31275 282 aa29.3■■■□□ 2.28
CBX4-203ENST00000494546 FAPQ12884 760 aa29.3■■■□□ 2.28
CBX4-203ENST00000494546 SELPLGQ14242 412 aa29.3■■■□□ 2.28
CBX4-203ENST00000494546 CYP51A1Q16850 503 aa29.3■■■□□ 2.28
CBX4-203ENST00000494546 NCMAPQ5T1S8 102 aa29.3■■■□□ 2.28
CBX4-203ENST00000494546 GPAT4Q86UL3 456 aa29.3■■■□□ 2.28
CBX4-203ENST00000494546 MUCL1Q96DR8 90 aa29.3■■■□□ 2.28
CBX4-203ENST00000494546 FGFR1OP2Q9NVK5 253 aa29.3■■■□□ 2.28
CBX4-203ENST00000494546 RNF115Q9Y4L5 304 aa29.3■■■□□ 2.28
CBX4-203ENST00000494546 PRORSD1PA6NEY8 169 aa29.29■■■□□ 2.28
CBX4-203ENST00000494546 ELOA3DA6NLF2 546 aaPredicted RBP29.29■■■□□ 2.28
CBX4-203ENST00000494546 AHSA1O95433 338 aa29.29■■■□□ 2.28
CBX4-203ENST00000494546 CD3EP07766 207 aa29.29■■■□□ 2.28
CBX4-203ENST00000494546 ELOA3BQ3SY89 546 aa29.29■■■□□ 2.28
CBX4-203ENST00000494546 TIMM23BQ5SRD1 257 aa29.29■■■□□ 2.28
CBX4-203ENST00000494546 TMEM225Q6GV28 225 aa29.29■■■□□ 2.28
CBX4-203ENST00000494546 P3H2Q8IVL5 708 aa29.29■■■□□ 2.28
CBX4-203ENST00000494546 ELOA3Q8NG57 546 aa29.29■■■□□ 2.28
CBX4-203ENST00000494546 OR9K2Q8NGE7 335 aa29.29■■■□□ 2.28
CBX4-203ENST00000494546 OR52E4Q8NGH9 312 aa29.29■■■□□ 2.28
CBX4-203ENST00000494546 STK35Q8TDR2 534 aa29.29■■■□□ 2.28
CBX4-203ENST00000494546 AKAP1Q92667 903 aaKnown RBP eCLIP29.29■■■□□ 2.28
CBX4-203ENST00000494546 SF3B5Q9BWJ5 86 aaKnown RBP29.29■■■□□ 2.28
CBX4-203ENST00000494546 UPB1Q9UBR1 384 aa29.29■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms