RNA–Protein interactions for RNA: ENST00000489853.1

SNRNP40-206, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 1,928 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-206ENST00000489853 PAPD4Q6PIY7 484 aaKnown RBP4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 ZNF322Q6U7Q0 402 aaPredicted RBP4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 SBSNQ6UWP8 590 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 VITQ6UXI7 678 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 ACOT7LQ6ZUV0 252 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 PRSS45Q7RTY3 260 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 WFDC8Q8IUA0 241 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 SYT12Q8IV01 421 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 TEX26Q8N6G2 289 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 OR4K2Q8NGD2 314 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 OR52N2Q8NGI0 321 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 OR5D16Q8NGK9 328 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 BBS10Q8TAM1 723 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 ARRDC2Q8TBH0 407 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 SLC7A13Q8TCU3 470 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 BRIX1Q8TDN6 353 aaKnown RBP4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 C15orf40Q8WUR7 153 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 RNF141Q8WVD5 230 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 SPRYD4Q8WW59 207 aaPredicted RBP4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 TIFAQ96CG3 184 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 ZNF649Q9BS31 505 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 ALG8Q9BVK2 526 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 ZNF471Q9BX82 626 aaPredicted RBP4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 ULBP1Q9BZM6 244 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 WDR13Q9H1Z4 485 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 KRCC1Q9NPI7 259 aaPredicted RBP4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 MAN2C1Q9NTJ4 1040 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 GPATCH2Q9NW75 528 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 TMEM161AQ9NX61 479 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 CRIM1Q9NZV1 1036 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 KLHL9Q9P2J3 617 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 UXTQ9UBK9 157 aaPredicted RBP4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 CGGBP1Q9UFW8 167 aaPredicted RBP4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 TNFSF18Q9UNG2 199 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 EMC9Q9Y3B6 208 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 PARP14Q460N5 1801 aa4.4□□□□□ -1.7
SNRNP40-206ENST00000489853 ANKRD31Q8N7Z5 1873 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 RNF222A6NCQ9 220 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 GGT3PA6NGU5 568 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 ACOD1A6NK06 481 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 SEC14L6B5MCN3 397 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 RNASEK-C17orf49H0YIS7 233 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 MFNGO00587 321 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 HCRTO43612 131 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 PIP5K1CO60331 668 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 TLR5O60602 858 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 CLDN11O75508 207 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 STK16O75716 305 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 AK1P00568 194 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 F10P00742 488 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 CRHP06850 196 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 H1F0P07305 194 aaKnown RBP4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 ITGA5P08648 1049 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 IL3P08700 152 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 IQCF3P0C7M6 154 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 LINC00614P0C842 121 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 PRSS56P0CW18 603 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 S1PR1P21453 382 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 CPT2P23786 658 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 ACKR3P25106 362 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 ELAVL4P26378 380 aaKnown RBP4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 GABRR2P28476 465 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 AVPR2P30518 371 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 GDF5P43026 501 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 PTGER3P43115 390 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 SLC11A2P49281 568 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 RGS19P49795 217 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 CAV2P51636 162 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 EPHB3P54753 998 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 F2RL1P55085 397 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 LIM2P55344 173 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 OR10A3P58181 314 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 OR2B8PP59922 312 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 LSM6P62312 80 aaKnown RBP4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 RAP1AP62834 184 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 SRSF3P84103 164 aaKnown RBP4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 NAAAQ02083 359 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 OC90Q02509 493 aaPredicted RBP4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 GAGE1Q13065 139 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 RBM39Q14498 530 aaKnown RBP4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 IHHQ14623 411 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 MLC1Q15049 377 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 RSU1Q15404 277 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 OR8G1Q15617 311 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 ZBTB6Q15916 424 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 CPSF6Q16630 551 aaKnown RBP eCLIP4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 GFOD2Q3B7J2 385 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 SLC25A35Q3KQZ1 300 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 LINC00303Q3SY05 128 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 PLEKHN1Q494U1 663 aaPredicted RBP4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 GGTA1PQ4G0N0 100 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 UBE2NLQ5JXB2 153 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 NCMAPQ5T1S8 102 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 HENMT1Q5T8I9 393 aaKnown RBP4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 DCAF12L2Q5VW00 463 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 TRIM40Q6P9F5 258 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 CRTC1Q6UUV9 634 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 DRAM2Q6UX65 266 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 SPNS3Q6ZMD2 512 aa4.4□□□□□ -1.71
SNRNP40-206ENST00000489853 ZNF852Q6ZMS4 543 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms