RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	MMADHC	Q9H3L0	296 aa	Predicted RBP	7.86	□□□□□ -1.15
USP4-213	ENST00000488520	IKZF5	Q9H5V7	419 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	GALNT9	Q9HCQ5	603 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	SH2D2A	Q9NP31	389 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	QPCTL	Q9NXS2	382 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	TAS2R1	Q9NYW7	299 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	SELENON	Q9NZV5	590 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	MED11	Q9P086	117 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	RPS6KB2	Q9UBS0	482 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	ZNF629	Q9UEG4	869 aa	Predicted RBP	7.86	□□□□□ -1.15
USP4-213	ENST00000488520	RPS6KA6	Q9UK32	745 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	PRDM4	Q9UKN5	801 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	BAG5	Q9UL15	447 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	CARD8	Q9Y2G2	431 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	SLC6A5	Q9Y345	797 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520		A0A087WZY1	265 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	LRRC3C	A6NJW4	275 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	AHRR	A9YTQ3	701 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	FXYD1	O00168	92 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	TRIM3	O75382	744 aa	Predicted RBP	7.85	□□□□□ -1.15
USP4-213	ENST00000488520	CIB2	O75838	187 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	ZNF682	O95780	498 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	LINGO3	P0C6S8	592 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	UBTFL6	P0CB48	400 aa	Predicted RBP	7.85	□□□□□ -1.15
USP4-213	ENST00000488520	HK1	P19367	917 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	DPP4	P27487	766 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	RYK	P34925	604 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	TIMP3	P35625	211 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	SLC6A8	P48029	635 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	NCALD	P61601	193 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	CRYZ	Q08257	329 aa	Known RBP	7.85	□□□□□ -1.15
USP4-213	ENST00000488520	BNIP2	Q12982	314 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	FGFBP1	Q14512	234 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	ADRM1	Q16186	407 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	LRRC23	Q53EV4	343 aa	Predicted RBP	7.85	□□□□□ -1.15
USP4-213	ENST00000488520		Q5PR19	223 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	SHE	Q5VZ18	495 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	AP1AR	Q63HQ0	302 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	C8orf82	Q6P1X6	216 aa	Predicted RBP	7.85	□□□□□ -1.15
USP4-213	ENST00000488520	CCDC80	Q76M96	950 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	OLIG3	Q7RTU3	272 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	LUZP2	Q86TE4	346 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	VRK2	Q86Y07	508 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	PTOV1	Q86YD1	416 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	LACC1	Q8IV20	430 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	TMEM234	Q8WY98	164 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	POP5	Q969H6	163 aa	Known RBP	7.85	□□□□□ -1.15
USP4-213	ENST00000488520	ZG16B	Q96DA0	208 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	TPD52L3	Q96J77	140 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520		Q96MF0	132 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	TIMP4	Q99727	224 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	PINK1	Q9BXM7	581 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	TRIM15	Q9C019	465 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	QRSL1	Q9H0R6	528 aa	Known RBP	7.85	□□□□□ -1.15
USP4-213	ENST00000488520	TMEM27	Q9HBJ8	222 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	ACKR4	Q9NPB9	350 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	SERINC1	Q9NRX5	453 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	BEX4	Q9NWD9	120 aa	Predicted RBP	7.85	□□□□□ -1.15
USP4-213	ENST00000488520	FLRT3	Q9NZU0	649 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	MAGEL2	Q9UJ55	1249 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	ZNF443	Q9Y2A4	671 aa	Predicted RBP	7.85	□□□□□ -1.15
USP4-213	ENST00000488520	SLC9A8	Q9Y2E8	581 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	ABCA1	O95477	2261 aa		7.85	□□□□□ -1.15
USP4-213	ENST00000488520	CFAP73	A6NFT4	308 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	FAM171A2	A8MVW0	826 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	INAFM1	C9JVW0	142 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	AP3D1	O14617	1153 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	ARHGEF9	O43307	516 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	HRG	P04196	525 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	C8B	P07358	591 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	HSD17B1	P14061	328 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	CTSS	P25774	331 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	SRD5A2	P31213	254 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	PRKAR1B	P31321	381 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	GZMM	P51124	257 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	SELENOW	P63302	87 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	FUT5	Q11128	374 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	TRIM25	Q14258	630 aa	Known RBP	7.84	□□□□□ -1.15
USP4-213	ENST00000488520	GANAB	Q14697	944 aa	Known RBP	7.84	□□□□□ -1.15
USP4-213	ENST00000488520	MAPK14	Q16539	360 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	GLYR1	Q49A26	553 aa	Predicted RBP	7.84	□□□□□ -1.15
USP4-213	ENST00000488520	DCST1	Q5T197	706 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	AAGAB	Q6PD74	315 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	PLXDC2	Q6UX71	529 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	APOOL	Q6UXV4	268 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	CHMP1B	Q7LBR1	199 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	CXXC5	Q7LFL8	322 aa	Known RBP	7.84	□□□□□ -1.15
USP4-213	ENST00000488520	HMGN2P46	Q86SG4	172 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	RANBP3L	Q86VV4	465 aa	Predicted RBP	7.84	□□□□□ -1.15
USP4-213	ENST00000488520	CXorf67	Q86X51	503 aa	Predicted RBP	7.84	□□□□□ -1.15
USP4-213	ENST00000488520	DHFR2	Q86XF0	187 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	C10orf67	Q8IYJ2	551 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	WDSUB1	Q8N9V3	476 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	SMYD1	Q8NB12	490 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	OR5W2	Q8NH69	310 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	FBXO27	Q8NI29	283 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	NSMCE2	Q96MF7	247 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	RNF145	Q96MT1	663 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	PIGQ	Q9BRB3	760 aa		7.84	□□□□□ -1.15
USP4-213	ENST00000488520	RBM24	Q9BX46	236 aa	Known RBP	7.84	□□□□□ -1.15

Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms