RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 FBXO48Q5FWF7 155 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 REC114Q7Z4M0 266 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 FGD2Q7Z6J4 655 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 LILRA3Q8N6C8 439 aaPredicted RBP7.07□□□□□ -1.28
USP4-211ENST00000485450 KCTD7Q96MP8 289 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 FEVQ99581 238 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 PINK1Q9BXM7 581 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 COMMD3Q9UBI1 195 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 PCTPQ9UKL6 214 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 ARHGEF33A8MVX0 844 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 CCL22O00626 93 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 UGDHO60701 494 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 SMIM10L1P0DMW3 83 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 HOXB9P17482 250 aaPredicted RBP7.07□□□□□ -1.28
USP4-211ENST00000485450 HTR5AP47898 357 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 HHEXQ03014 270 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 SKP2Q13309 424 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 IL11RAQ14626 422 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 C22orf42Q6IC83 251 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 LIN54Q6MZP7 749 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 TMEM91Q6ZNR0 172 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 VTCN1Q7Z7D3 282 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 OR2T35Q8NGX2 323 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 COQ8AQ8NI60 647 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 NT5CQ8TCD5 201 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 SMIM10Q96HG1 83 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 PDCD10Q9BUL8 212 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 SLC25A19Q9HC21 320 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 C1GALT1Q9NS00 363 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 NUDT15Q9NV35 164 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 LRIT1Q9P2V4 623 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 IGLV3-12A0A075B6K2 115 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 PLSCR5A0PG75 271 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 A8MVJ9 347 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 SUPT3HB4E1H0 165 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 CDC7O00311 574 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 SULT1C2O00338 296 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 ADAMDEC1O15204 470 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 ACP5P13686 325 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 PIK3CGP48736 1102 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 PPM1FP49593 454 aaPredicted RBP7.06□□□□□ -1.28
USP4-211ENST00000485450 RAB28P51157 221 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 RAG2P55895 527 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 ZP1P60852 638 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 DEFA5Q01523 94 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 MEDAGQ5VYS4 303 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 FCRL6Q6DN72 434 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 ELP2Q6IA86 826 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 CBLL1Q75N03 491 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 FAM129CQ86XR2 697 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 RNF113BQ8IZP6 322 aaKnown RBP7.06□□□□□ -1.28
USP4-211ENST00000485450 ZSCAN1Q8NBB4 408 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 DEFB124Q8NES8 71 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 OR52E1Q8NGJ3 308 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 OR9A2Q8NGT5 310 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 STAG3L4Q8TBR4 150 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 OTULINQ96BN8 352 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 HSH2DQ96JZ2 352 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 C7orf34Q96L11 122 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 POLR2J2Q9GZM3 115 aaKnown RBP7.06□□□□□ -1.28
USP4-211ENST00000485450 PELI2Q9HAT8 420 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 EXOSC3Q9NQT5 275 aaKnown RBP7.06□□□□□ -1.28
USP4-211ENST00000485450 CLN6Q9NWW5 311 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 TAS2R13Q9NYV9 303 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 CLEC2DQ9UHP7 191 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 CRYL1Q9Y2S2 319 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 FER1L5A0AVI2 2057 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 CXorf65A6NEN9 183 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 ANXA2P2A6NMY6 339 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 SDC3O75056 442 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 AGR2O95994 175 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 MT-CO3P00414 261 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 IFI6P09912 130 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 ANXA8P13928 327 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 CPEP16870 476 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 CXCL2P19875 107 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 IMPA1P29218 277 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 CCR9P51686 369 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 MAZP56270 477 aaKnown RBP7.06□□□□□ -1.28
USP4-211ENST00000485450 NUTF2P61970 127 aaKnown RBP7.06□□□□□ -1.28
USP4-211ENST00000485450 STX4Q12846 297 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 RBBP7Q16576 425 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 RFTN2Q52LD8 501 aaPredicted RBP7.06□□□□□ -1.28
USP4-211ENST00000485450 SPANXN4Q5MJ08 99 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 LIPKQ5VXJ0 399 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 SFTPA2Q8IWL1 248 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 PDZD9Q8IXQ8 264 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 PROKR2Q8NFJ6 384 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 OR2A1Q8NGT9 310 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 OR52P1PQ8NH57 321 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 RHBDD1Q8TEB9 315 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 FCRL1Q96LA6 429 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 LURAP1Q96LR2 239 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 TEFMQ96QE5 360 aaKnown RBP7.06□□□□□ -1.28
USP4-211ENST00000485450 ATF6BQ99941 703 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 YIPF4Q9BSR8 244 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 RNF32Q9H0A6 362 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 DPAGT1Q9H3H5 408 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 FN3KQ9H479 309 aa7.06□□□□□ -1.28
USP4-211ENST00000485450 CLMPQ9H6B4 373 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms