RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 MBD3O95983 291 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 DCNP07585 359 aaKnown RBP1.52□□□□□ -2.17
VPS50-216ENST00000484954 TSPY4P0CV99 314 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 TSPY10P0CW01 314 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 KRTAP12-3P60328 96 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 TMEM183BQ1AE95 376 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 TRIM16LQ309B1 348 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 BCL7AQ4VC05 210 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 PARP10Q53GL7 1025 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 NIPAL3Q6P499 406 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 PLBD1Q6P4A8 553 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 ZNF620Q6ZNG0 422 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 CAMK2N1Q7Z7J9 78 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 PAQR7Q86WK9 346 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 PCP2Q8IVA1 136 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 TMEM183AQ8IXX5 376 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 MYOCDQ8IZQ8 938 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 KDM8Q8N371 416 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 FTMTQ8N4E7 242 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 ZNF713Q8N859 430 aaPredicted RBP1.52□□□□□ -2.17
VPS50-216ENST00000484954 TCTEX1D2Q8WW35 142 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 FGF11Q92914 225 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 RMI2Q96E14 147 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 C12orf66Q96MD2 445 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 P2RY13Q9BPV8 354 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 ROGDIQ9GZN7 287 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 RAB17Q9H0T7 212 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 IFI27L2Q9H2X8 130 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 SIGLEC8Q9NYZ4 499 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 ATXN10Q9UBB4 475 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 CLCF1Q9UBD9 225 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 ZNF629Q9UEG4 869 aaPredicted RBP1.52□□□□□ -2.17
VPS50-216ENST00000484954 HEBP2Q9Y5Z4 205 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 ALG6Q9Y672 507 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 SPAG9O60271 1321 aaKnown RBP1.51□□□□□ -2.17
VPS50-216ENST00000484954 IQANK1A0A1B0GTG1 560 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 A0A1B0GUS0 222 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 AGPAT2O15120 278 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 MSH4O15457 936 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 MBTPS2O43462 519 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 SSX5O60225 188 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 ENTPD5O75356 428 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 VPS26AO75436 327 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 OR4F21O95013 312 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 TRIM16O95361 564 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 PTBP3O95758 552 aaKnown RBP1.51□□□□□ -2.17
VPS50-216ENST00000484954 TLX1NBP0CAT3 122 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 MUC1P15941 1255 aaPredicted RBP1.51□□□□□ -2.17
VPS50-216ENST00000484954 POLR2EP19388 210 aaKnown RBP1.51□□□□□ -2.17
VPS50-216ENST00000484954 NPR2P20594 1047 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 TBXA2RP21731 343 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 FGF9P31371 208 aaPredicted RBP1.51□□□□□ -2.17
VPS50-216ENST00000484954 FMO3P31513 532 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 KIR2DS4P43632 304 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 KRTAP12-4P60329 112 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 SPIBQ01892 262 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 ENPEPQ07075 957 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 KIAA0087Q14695 138 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 GNMTQ14749 295 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 LRRC10Q5BKY1 277 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 ZNF311Q5JNZ3 666 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 TIGD3Q6B0B8 471 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 CENPUQ71F23 418 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 ZNF571Q7Z3V5 609 aaPredicted RBP1.51□□□□□ -2.17
VPS50-216ENST00000484954 KIAA1328Q86T90 577 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 SNX32Q86XE0 403 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 FAM86B1Q8N7N1 296 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 ATP6V0D2Q8N8Y2 350 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 DENND6BQ8NEG7 585 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 MRPL38Q96DV4 380 aaKnown RBP1.51□□□□□ -2.17
VPS50-216ENST00000484954 ASB9Q96DX5 294 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 DNTTIP1Q9H147 329 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 CLMPQ9H6B4 373 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 SUDS3Q9H7L9 328 aaPredicted RBP1.51□□□□□ -2.17
VPS50-216ENST00000484954 VAT1LQ9HCJ6 419 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 STAP1Q9ULZ2 295 aa1.51□□□□□ -2.17
VPS50-216ENST00000484954 SH3TC1Q8TE82 1336 aa1.5□□□□□ -2.17
VPS50-216ENST00000484954 ZNF233A6NK53 670 aa1.5□□□□□ -2.17
VPS50-216ENST00000484954 RNASE2P10153 161 aaKnown RBP1.5□□□□□ -2.17
VPS50-216ENST00000484954 PGCP20142 388 aa1.5□□□□□ -2.17
VPS50-216ENST00000484954 HPCAL1P37235 193 aa1.5□□□□□ -2.17
VPS50-216ENST00000484954 RABIFP47224 123 aa1.5□□□□□ -2.17
VPS50-216ENST00000484954 ARRB1P49407 418 aaPredicted RBP1.5□□□□□ -2.17
VPS50-216ENST00000484954 DAP3P51398 398 aaKnown RBP1.5□□□□□ -2.17
VPS50-216ENST00000484954 NAPAP54920 295 aa1.5□□□□□ -2.17
VPS50-216ENST00000484954 HSF2Q03933 536 aa1.5□□□□□ -2.17
VPS50-216ENST00000484954 PPP2R5CQ13362 524 aa1.5□□□□□ -2.17
VPS50-216ENST00000484954 STK11Q15831 433 aa1.5□□□□□ -2.17
VPS50-216ENST00000484954 OR2G6Q5TZ20 316 aa1.5□□□□□ -2.17
VPS50-216ENST00000484954 ZNF547Q8IVP9 402 aa1.5□□□□□ -2.17
VPS50-216ENST00000484954 MISPQ8IVT2 679 aa1.5□□□□□ -2.17
VPS50-216ENST00000484954 FAM9BQ8IZU0 186 aa1.5□□□□□ -2.17
VPS50-216ENST00000484954 MSANTD4Q8NCY6 345 aa1.5□□□□□ -2.17
VPS50-216ENST00000484954 ZFP90Q8TF47 636 aa1.5□□□□□ -2.17
VPS50-216ENST00000484954 LRRC58Q96CX6 371 aa1.5□□□□□ -2.17
VPS50-216ENST00000484954 DEFB127Q9H1M4 99 aa1.5□□□□□ -2.17
VPS50-216ENST00000484954 RNF167Q9H6Y7 350 aa1.5□□□□□ -2.17
VPS50-216ENST00000484954 FOLH1BQ9HBA9 442 aa1.5□□□□□ -2.17
VPS50-216ENST00000484954 AATFQ9NY61 560 aaKnown RBP eCLIP1.5□□□□□ -2.17
VPS50-216ENST00000484954 ZNF226Q9NYT6 803 aa1.5□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms