RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 CADM2Q8N3J6 435 aa18.96■□□□□ 0.63
USP40-215ENST00000484528 OR9I1Q8NGQ6 314 aa18.96■□□□□ 0.63
USP40-215ENST00000484528 OR52P1PQ8NH57 321 aa18.96■□□□□ 0.63
USP40-215ENST00000484528 HS6ST2Q96MM7 605 aa18.96■□□□□ 0.63
USP40-215ENST00000484528 OR52B2Q96RD2 323 aa18.96■□□□□ 0.63
USP40-215ENST00000484528 SLC7A10Q9NS82 523 aa18.96■□□□□ 0.63
USP40-215ENST00000484528 P2RX2Q9UBL9 471 aa18.96■□□□□ 0.63
USP40-215ENST00000484528 POU2F3Q9UKI9 436 aa18.96■□□□□ 0.63
USP40-215ENST00000484528 ATRQ13535 2644 aa18.95■□□□□ 0.62
USP40-215ENST00000484528 FAAHO00519 579 aa18.95■□□□□ 0.62
USP40-215ENST00000484528 EIF1BO60739 113 aaKnown RBP18.95■□□□□ 0.62
USP40-215ENST00000484528 ANP32DO95626 131 aa18.95■□□□□ 0.62
USP40-215ENST00000484528 IL6P05231 212 aa18.95■□□□□ 0.62
USP40-215ENST00000484528 UQCRBP14927 111 aa18.95■□□□□ 0.62
USP40-215ENST00000484528 MAGOHP61326 146 aaKnown RBP18.95■□□□□ 0.62
USP40-215ENST00000484528 BNIP2Q12982 314 aa18.95■□□□□ 0.62
USP40-215ENST00000484528 ETFDHQ16134 617 aa18.95■□□□□ 0.62
USP40-215ENST00000484528 OTUD3Q5T2D3 398 aaPredicted RBP18.95■□□□□ 0.62
USP40-215ENST00000484528 ATG16L1Q676U5 607 aa18.95■□□□□ 0.62
USP40-215ENST00000484528 SLC22A25Q6T423 547 aa18.95■□□□□ 0.62
USP40-215ENST00000484528 TMEM108Q6UXF1 575 aa18.95■□□□□ 0.62
USP40-215ENST00000484528 DTX2Q86UW9 622 aa18.95■□□□□ 0.62
USP40-215ENST00000484528 TMEM99Q8N816 258 aa18.95■□□□□ 0.62
USP40-215ENST00000484528 PMM1Q92871 262 aa18.95■□□□□ 0.62
USP40-215ENST00000484528 NAA11Q9BSU3 229 aaPredicted RBP18.95■□□□□ 0.62
USP40-215ENST00000484528 REG4Q9BYZ8 158 aa18.95■□□□□ 0.62
USP40-215ENST00000484528 MANSC1Q9H8J5 431 aa18.95■□□□□ 0.62
USP40-215ENST00000484528 FAIMQ9NVQ4 179 aa18.95■□□□□ 0.62
USP40-215ENST00000484528 UPB1Q9UBR1 384 aa18.95■□□□□ 0.62
USP40-215ENST00000484528 SLC9A8Q9Y2E8 581 aa18.95■□□□□ 0.62
USP40-215ENST00000484528 RTTNQ86VV8 2226 aa18.94■□□□□ 0.62
USP40-215ENST00000484528 CDHR4A6H8M9 788 aa18.94■□□□□ 0.62
USP40-215ENST00000484528 E7EQL1 145 aa18.94■□□□□ 0.62
USP40-215ENST00000484528 AKR7A3O95154 331 aa18.94■□□□□ 0.62
USP40-215ENST00000484528 CXCR1P25024 350 aa18.94■□□□□ 0.62
USP40-215ENST00000484528 CD40P25942 277 aa18.94■□□□□ 0.62
USP40-215ENST00000484528 DSTNP60981 165 aa18.94■□□□□ 0.62
USP40-215ENST00000484528 CEACAM7Q14002 265 aa18.94■□□□□ 0.62
USP40-215ENST00000484528 OR7A5Q15622 319 aa18.94■□□□□ 0.62
USP40-215ENST00000484528 TSPO2Q5TGU0 170 aa18.94■□□□□ 0.62
USP40-215ENST00000484528 KLHL17Q6TDP4 642 aa18.94■□□□□ 0.62
USP40-215ENST00000484528 B3GLCTQ6Y288 498 aa18.94■□□□□ 0.62
USP40-215ENST00000484528 SSX8Q7RTT4 187 aa18.94■□□□□ 0.62
USP40-215ENST00000484528 VPS33AQ96AX1 596 aa18.94■□□□□ 0.62
USP40-215ENST00000484528 MAELQ96JY0 434 aaKnown RBP18.94■□□□□ 0.62
USP40-215ENST00000484528 ADAM19Q9H013 955 aa18.94■□□□□ 0.62
USP40-215ENST00000484528 TPT1P8Q9HAU6 139 aa18.94■□□□□ 0.62
USP40-215ENST00000484528 NKIRAS1Q9NYS0 192 aa18.94■□□□□ 0.62
USP40-215ENST00000484528 ZNF443Q9Y2A4 671 aaPredicted RBP18.94■□□□□ 0.62
USP40-215ENST00000484528 DSPPQ9NZW4 1301 aa18.94■□□□□ 0.62
USP40-215ENST00000484528 SLCO1B7G3V0H7 640 aa18.93■□□□□ 0.62
USP40-215ENST00000484528 PDLIM1O00151 329 aa18.93■□□□□ 0.62
USP40-215ENST00000484528 THBS1P07996 1170 aa18.93■□□□□ 0.62
USP40-215ENST00000484528 PRG2P13727 222 aa18.93■□□□□ 0.62
USP40-215ENST00000484528 SLC25A3Q00325 362 aa18.93■□□□□ 0.62
USP40-215ENST00000484528 SLC17A1Q14916 467 aa18.93■□□□□ 0.62
USP40-215ENST00000484528 LIN52Q52LA3 116 aa18.93■□□□□ 0.62
USP40-215ENST00000484528 C6orf10Q5SRN2 563 aa18.93■□□□□ 0.62
USP40-215ENST00000484528 AGAP6Q5VW22 663 aa18.93■□□□□ 0.62
USP40-215ENST00000484528 PAQR6Q6TCH4 344 aa18.93■□□□□ 0.62
USP40-215ENST00000484528 ZNF440Q8IYI8 595 aa18.93■□□□□ 0.62
USP40-215ENST00000484528 SLC38A5Q8WUX1 472 aa18.93■□□□□ 0.62
USP40-215ENST00000484528 MUS81Q96NY9 551 aa18.93■□□□□ 0.62
USP40-215ENST00000484528 CACNG6Q9BXT2 260 aa18.93■□□□□ 0.62
USP40-215ENST00000484528 ZIM2Q9NZV7 527 aa18.93■□□□□ 0.62
USP40-215ENST00000484528 ADAM21Q9UKJ8 722 aa18.93■□□□□ 0.62
USP40-215ENST00000484528 B3GALT5Q9Y2C3 310 aa18.93■□□□□ 0.62
USP40-215ENST00000484528 LIPT2A6NK58 231 aa18.92■□□□□ 0.62
USP40-215ENST00000484528 PTAFRP25105 342 aa18.92■□□□□ 0.62
USP40-215ENST00000484528 ACAA2P42765 397 aaKnown RBP18.92■□□□□ 0.62
USP40-215ENST00000484528 CRISP3P54108 245 aa18.92■□□□□ 0.62
USP40-215ENST00000484528 DMTNQ08495 405 aa18.92■□□□□ 0.62
USP40-215ENST00000484528 OR7E24Q6IFN5 339 aa18.92■□□□□ 0.62
USP40-215ENST00000484528 GPAT4Q86UL3 456 aa18.92■□□□□ 0.62
USP40-215ENST00000484528 CLIP4Q8N3C7 705 aa18.92■□□□□ 0.62
USP40-215ENST00000484528 WDR31Q8NA23 367 aa18.92■□□□□ 0.62
USP40-215ENST00000484528 OR9K2Q8NGE7 335 aa18.92■□□□□ 0.62
USP40-215ENST00000484528 HTRA1Q92743 480 aa18.92■□□□□ 0.62
USP40-215ENST00000484528 TMEM19Q96HH6 336 aa18.92■□□□□ 0.62
USP40-215ENST00000484528 ITCHQ96J02 903 aa18.92■□□□□ 0.62
USP40-215ENST00000484528 ZNF385AQ96PM9 386 aaKnown RBP18.92■□□□□ 0.62
USP40-215ENST00000484528 RMND5AQ9H871 391 aa18.92■□□□□ 0.62
USP40-215ENST00000484528 SDR39U1Q9NRG7 319 aaPredicted RBP18.92■□□□□ 0.62
USP40-215ENST00000484528 PARPBPQ9NWS1 579 aa18.92■□□□□ 0.62
USP40-215ENST00000484528 ADPRHL2Q9NX46 363 aa18.92■□□□□ 0.62
USP40-215ENST00000484528 CALML5Q9NZT1 146 aa18.92■□□□□ 0.62
USP40-215ENST00000484528 MGAT4BQ9UQ53 548 aa18.92■□□□□ 0.62
USP40-215ENST00000484528 COL6A5A8TX70 2615 aa18.91■□□□□ 0.62
USP40-215ENST00000484528 ARFGEF3Q5TH69 2177 aa18.91■□□□□ 0.62
USP40-215ENST00000484528 UBDO15205 165 aa18.91■□□□□ 0.62
USP40-215ENST00000484528 SSX4O60224 188 aa18.91■□□□□ 0.62
USP40-215ENST00000484528 GPIP06744 558 aa18.91■□□□□ 0.62
USP40-215ENST00000484528 TFPTP0C1Z6 253 aa18.91■□□□□ 0.62
USP40-215ENST00000484528 CDH2P19022 906 aaPredicted RBP18.91■□□□□ 0.62
USP40-215ENST00000484528 NCF2P19878 526 aaPredicted RBP18.91■□□□□ 0.62
USP40-215ENST00000484528 TTKP33981 857 aa18.91■□□□□ 0.62
USP40-215ENST00000484528 POLR2JP52435 117 aaKnown RBP18.91■□□□□ 0.62
USP40-215ENST00000484528 COPZ1P61923 177 aa18.91■□□□□ 0.62
USP40-215ENST00000484528 IRX1P78414 480 aaPredicted RBP18.91■□□□□ 0.62
USP40-215ENST00000484528 GSTA3Q16772 222 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms