RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 KIF18BQ86Y91 864 aa14.16□□□□□ -0.14
UPF3A-208ENST00000484246 MCEMP1Q8IX19 187 aa14.16□□□□□ -0.14
UPF3A-208ENST00000484246 OR4D11Q8NGI4 311 aa14.16□□□□□ -0.14
UPF3A-208ENST00000484246 PIGXQ8TBF5 258 aa14.16□□□□□ -0.14
UPF3A-208ENST00000484246 SLC26A7Q8TE54 656 aa14.16□□□□□ -0.14
UPF3A-208ENST00000484246 SLC38A4Q969I6 547 aa14.16□□□□□ -0.14
UPF3A-208ENST00000484246 MARVELD3Q96A59 401 aa14.16□□□□□ -0.14
UPF3A-208ENST00000484246 C14orf79Q96F83 325 aa14.16□□□□□ -0.14
UPF3A-208ENST00000484246 SLC47A1Q96FL8 570 aa14.16□□□□□ -0.14
UPF3A-208ENST00000484246 POLR2J2Q9GZM3 115 aaKnown RBP14.16□□□□□ -0.14
UPF3A-208ENST00000484246 POLR2J3Q9H1A7 115 aaKnown RBP14.16□□□□□ -0.14
UPF3A-208ENST00000484246 TMEM27Q9HBJ8 222 aa14.16□□□□□ -0.14
UPF3A-208ENST00000484246 NDE1Q9NXR1 346 aa14.16□□□□□ -0.14
UPF3A-208ENST00000484246 GALNT8Q9NY28 637 aa14.16□□□□□ -0.14
UPF3A-208ENST00000484246 RPS6KB2Q9UBS0 482 aa14.16□□□□□ -0.14
UPF3A-208ENST00000484246 KCNN3Q9UGI6 736 aa14.16□□□□□ -0.14
UPF3A-208ENST00000484246 PROCRQ9UNN8 238 aa14.16□□□□□ -0.14
UPF3A-208ENST00000484246 IGKV1D-42A0A075B6H8 117 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 A0A087WUJ7 227 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 ELOA3DA6NLF2 546 aaPredicted RBP14.15□□□□□ -0.14
UPF3A-208ENST00000484246 ZNF716A6NP11 495 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 FTCDNL1E5RQL4 147 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 GPIP06744 558 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 YES1P07947 543 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 KLK2P20151 261 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 CCNA2P20248 432 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 MNAT1P51948 309 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 SIRPAP78324 504 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 EGR4Q05215 589 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 OR1Q1Q15612 314 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 ELOA3BQ3SY89 546 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 SPATS1Q496A3 300 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 CYBRD1Q53TN4 286 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 C1orf140Q5VVS0 124 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 PPP4R4Q6NUP7 873 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 ZNF474Q6S9Z5 364 aaPredicted RBP14.15□□□□□ -0.14
UPF3A-208ENST00000484246 ELOA3Q8NG57 546 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 OR6S1Q8NH40 331 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 PROX1Q92786 737 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 MCHR1Q99705 422 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 PTDSS2Q9BVG9 487 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 RBM24Q9BX46 236 aaKnown RBP14.15□□□□□ -0.14
UPF3A-208ENST00000484246 ELOVL5Q9NYP7 299 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 CLEC4AQ9UMR7 237 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 DOCK7Q96N67 2140 aa14.15□□□□□ -0.14
UPF3A-208ENST00000484246 CACNA1CQ13936 2221 aa14.14□□□□□ -0.15
UPF3A-208ENST00000484246 IGHV3-15A0A0B4J1V0 119 aa14.14□□□□□ -0.15
UPF3A-208ENST00000484246 CXCR6O00574 342 aa14.14□□□□□ -0.15
UPF3A-208ENST00000484246 CHP2O43745 196 aa14.14□□□□□ -0.15
UPF3A-208ENST00000484246 LYPD3O95274 346 aa14.14□□□□□ -0.15
UPF3A-208ENST00000484246 AHSA1O95433 338 aa14.14□□□□□ -0.15
UPF3A-208ENST00000484246 HSD17B1P14061 328 aa14.14□□□□□ -0.15
UPF3A-208ENST00000484246 UQCRC1P31930 480 aa14.14□□□□□ -0.15
UPF3A-208ENST00000484246 CPA2P48052 419 aa14.14□□□□□ -0.15
UPF3A-208ENST00000484246 OR2B6P58173 313 aa14.14□□□□□ -0.15
UPF3A-208ENST00000484246 RASGEF1BQ0VAM2 473 aa14.14□□□□□ -0.15
UPF3A-208ENST00000484246 LRRC23Q53EV4 343 aaPredicted RBP14.14□□□□□ -0.15
UPF3A-208ENST00000484246 TMEM201Q5SNT2 666 aa14.14□□□□□ -0.15
UPF3A-208ENST00000484246 TFAP2EQ6VUC0 442 aa14.14□□□□□ -0.15
UPF3A-208ENST00000484246 LUZP2Q86TE4 346 aa14.14□□□□□ -0.15
UPF3A-208ENST00000484246 MFSD8Q8NHS3 518 aa14.14□□□□□ -0.15
UPF3A-208ENST00000484246 KCTD14Q9BQ13 255 aaPredicted RBP14.14□□□□□ -0.15
UPF3A-208ENST00000484246 TMEM43Q9BTV4 400 aa14.14□□□□□ -0.15
UPF3A-208ENST00000484246 ZNF426Q9BUY5 554 aa14.14□□□□□ -0.15
UPF3A-208ENST00000484246 SELENONQ9NZV5 590 aa14.14□□□□□ -0.15
UPF3A-208ENST00000484246 EMC3Q9P0I2 261 aa14.14□□□□□ -0.15
UPF3A-208ENST00000484246 GMPR2Q9P2T1 348 aaKnown RBP14.14□□□□□ -0.15
UPF3A-208ENST00000484246 ADGRG4Q8IZF6 3080 aa14.13□□□□□ -0.15
UPF3A-208ENST00000484246 TRAPPC13A5PLN9 417 aa14.13□□□□□ -0.15
UPF3A-208ENST00000484246 AQP7P3A6NL99 342 aa14.13□□□□□ -0.15
UPF3A-208ENST00000484246 ZNF814B7Z6K7 855 aa14.13□□□□□ -0.15
UPF3A-208ENST00000484246 GPR171O14626 319 aa14.13□□□□□ -0.15
UPF3A-208ENST00000484246 OR2T1O43869 369 aa14.13□□□□□ -0.15
UPF3A-208ENST00000484246 SMNDC1O75940 238 aaKnown RBP eCLIP14.13□□□□□ -0.151e-7■■■□□ 15.1
UPF3A-208ENST00000484246 GGT1P19440 569 aa14.13□□□□□ -0.15
UPF3A-208ENST00000484246 FPR1P21462 350 aa14.13□□□□□ -0.15
UPF3A-208ENST00000484246 CCKARP32238 428 aa14.13□□□□□ -0.15
UPF3A-208ENST00000484246 CD79BP40259 229 aa14.13□□□□□ -0.15
UPF3A-208ENST00000484246 P2RY4P51582 365 aa14.13□□□□□ -0.15
UPF3A-208ENST00000484246 CDH12P55289 794 aa14.13□□□□□ -0.15
UPF3A-208ENST00000484246 SELENOWP63302 87 aa14.13□□□□□ -0.15
UPF3A-208ENST00000484246 BNIP2Q12982 314 aa14.13□□□□□ -0.15
UPF3A-208ENST00000484246 ENTPD8Q5MY95 495 aa14.13□□□□□ -0.15
UPF3A-208ENST00000484246 LINC00114Q6XXX2 140 aa14.13□□□□□ -0.15
UPF3A-208ENST00000484246 CBLL1Q75N03 491 aa14.13□□□□□ -0.15
UPF3A-208ENST00000484246 TSPYL5Q86VY4 417 aaPredicted RBP14.13□□□□□ -0.15
UPF3A-208ENST00000484246 CARM1Q86X55 608 aa14.13□□□□□ -0.15
UPF3A-208ENST00000484246 TUSC5Q8IXB3 177 aa14.13□□□□□ -0.15
UPF3A-208ENST00000484246 ZNF610Q8N9Z0 462 aa14.13□□□□□ -0.15
UPF3A-208ENST00000484246 ADAMTS16Q8TE57 1224 aa14.13□□□□□ -0.15
UPF3A-208ENST00000484246 LZICQ8WZA0 190 aa14.13□□□□□ -0.15
UPF3A-208ENST00000484246 NAA11Q9BSU3 229 aaPredicted RBP14.13□□□□□ -0.15
UPF3A-208ENST00000484246 SF3B5Q9BWJ5 86 aaKnown RBP14.13□□□□□ -0.15
UPF3A-208ENST00000484246 PRR14Q9BWN1 585 aa14.13□□□□□ -0.15
UPF3A-208ENST00000484246 OPN3Q9H1Y3 402 aaPredicted RBP14.13□□□□□ -0.15
UPF3A-208ENST00000484246 TRAV36DV7A0A075B6V5 113 aa14.12□□□□□ -0.15
UPF3A-208ENST00000484246 GOSR1O95249 250 aa14.12□□□□□ -0.15
UPF3A-208ENST00000484246 CNOT4O95628 575 aaKnown RBP14.12□□□□□ -0.15
UPF3A-208ENST00000484246 THRBP10828 461 aa14.12□□□□□ -0.15
UPF3A-208ENST00000484246 SSTR2P30874 369 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms