RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 OR52N5Q8NH56 324 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 TMEM45BQ96B21 275 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ZHX1-C8orf76Q96EF9 292 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 PIF1Q9H611 641 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 BARX1Q9HBU1 254 aaPredicted RBP10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 SLC7A10Q9NS82 523 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 SLC6A13Q9NSD5 602 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 CBLN4Q9NTU7 201 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 CHST2Q9Y4C5 530 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 DSPPQ9NZW4 1301 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 PTNP21246 168 aa10.74□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 CHI3L1P36222 383 aaPredicted RBP10.74□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 WDR4P57081 412 aaKnown RBP10.74□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 OR2B6P58173 313 aa10.74□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 SLC25A3Q00325 362 aa10.74□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 LRRC74AQ0VAA2 488 aa10.74□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 GSTA3Q16772 222 aa10.74□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 MRPL2Q5T653 305 aaKnown RBP10.74□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 TSPO2Q5TGU0 170 aa10.74□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 UBE2J2Q8N2K1 259 aa10.74□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 C17orf78Q8N4C9 275 aa10.74□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 DDIT4LQ96D03 193 aa10.74□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 DNAJA3Q96EY1 480 aa10.74□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 MAELQ96JY0 434 aaKnown RBP10.74□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 OR52E6Q96RD3 313 aa10.74□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 PANX1Q96RD7 426 aa10.74□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ALG2Q9H553 416 aa10.74□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 SLC17A5Q9NRA2 495 aa10.74□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 PARPBPQ9NWS1 579 aa10.74□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 IGHV4-30-2A0A087WSY4 118 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 A0A1W2PR80 420 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 CIB4A0PJX0 185 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 CDHR4A6H8M9 788 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 CFAP73A6NFT4 308 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 LIPT2A6NK58 231 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 CCT8L1PA6NM43 557 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 H7C417 338 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 GPRIN2O60269 458 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 NPIPB7O75200 414 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 DBIP07108 87 aaKnown RBP10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 TFPTP0C1Z6 253 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ZCCHC18P0CG32 403 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 IL7RP16871 459 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 CCNA2P20248 432 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 EPHA3P29320 983 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ZNF83P51522 516 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 NME5P56597 212 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 MST1LQ2TV78 715 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ZNF544Q6NX49 715 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 KLHL17Q6TDP4 642 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ZNF621Q6ZSS3 439 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 MUC15Q8N387 334 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 TRIML2Q8N7C3 387 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 GLB1L3Q8NCI6 653 aaPredicted RBP10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 WDR60Q8WVS4 1066 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 HS6ST2Q96MM7 605 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 NAA11Q9BSU3 229 aaPredicted RBP10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 SF3B5Q9BWJ5 86 aaKnown RBP10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 CACNG6Q9BXT2 260 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 WDR55Q9H6Y2 383 aaPredicted RBP10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 THAP1Q9NVV9 213 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 RLIMQ9NVW2 624 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 SLC9A8Q9Y2E8 581 aa10.73□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.73□□□□□ -0.696e-34■■■■□ 19.3
MSH5-SAPCD1-205ENST00000476085 AQP7P3A6NL99 342 aa10.72□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 HDAC3O15379 428 aa10.72□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 SSX4O60224 188 aa10.72□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 FZD7O75084 574 aa10.72□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 GSNP06396 782 aa10.72□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 MPGP29372 298 aa10.72□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 SLC18A1P54219 525 aa10.72□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 DSCR9P59020 149 aa10.72□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 HPCAP84074 193 aa10.72□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 LOXL1Q08397 574 aaPredicted RBP10.72□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 SWI5Q1ZZU3 235 aa10.72□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 CEP85LQ5SZL2 805 aa10.72□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 SLC22A25Q6T423 547 aa10.72□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 VRK2Q86Y07 508 aa10.72□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ZNF440Q8IYI8 595 aa10.72□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 TMEM99Q8N816 258 aa10.72□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 OR9K2Q8NGE7 335 aa10.72□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 SLC38A5Q8WUX1 472 aa10.72□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ZNF385AQ96PM9 386 aaKnown RBP10.72□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 RHNO1Q9BSD3 238 aa10.72□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 RSPO3Q9BXY4 272 aaPredicted RBP10.72□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 CENPHQ9H3R5 247 aa10.72□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 M0R1B8 84 aa10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 KRT75O95678 551 aa10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 IL6P05231 212 aa10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 GKN3PP0CG01 181 aa10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 NR2F1P10589 423 aa10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 APOBEC3AP31941 199 aaPredicted RBP10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ANXA11P50995 505 aaKnown RBP10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 FABP6P51161 128 aa10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 VLDLRP98155 873 aa10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 CEACAM7Q14002 265 aa10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 GNA13Q14344 377 aa10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 PDCD4Q53EL6 469 aaKnown RBP10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 OTUD3Q5T2D3 398 aaPredicted RBP10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 RNF220Q5VTB9 566 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms