RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 ARFGEF3Q5TH69 2177 aa19.78■□□□□ 0.76
USP4-208ENST00000464168 ZC3H12DA2A288 527 aaKnown RBP19.77■□□□□ 0.76
USP4-208ENST00000464168 ATP6V1G2-DDX39BF2Z307 99 aa19.77■□□□□ 0.76
USP4-208ENST00000464168 HMGN4O00479 90 aa19.77■□□□□ 0.76
USP4-208ENST00000464168 TYROBPO43914 113 aa19.77■□□□□ 0.76
USP4-208ENST00000464168 LMX1BO60663 402 aa19.77■□□□□ 0.76
USP4-208ENST00000464168 TACR3P29371 465 aa19.77■□□□□ 0.76
USP4-208ENST00000464168 MPGP29372 298 aa19.77■□□□□ 0.76
USP4-208ENST00000464168 PRPS1P60891 318 aa19.77■□□□□ 0.76
USP4-208ENST00000464168 SWI5Q1ZZU3 235 aa19.77■□□□□ 0.76
USP4-208ENST00000464168 C1QTNF12Q5T7M4 302 aa19.77■□□□□ 0.76
USP4-208ENST00000464168 PAQR6Q6TCH4 344 aa19.77■□□□□ 0.76
USP4-208ENST00000464168 NUDCD3Q8IVD9 361 aa19.77■□□□□ 0.76
USP4-208ENST00000464168 CMIPQ8IY22 773 aa19.77■□□□□ 0.76
USP4-208ENST00000464168 ANKFN1Q8N957 763 aa19.77■□□□□ 0.76
USP4-208ENST00000464168 ZIC4Q8N9L1 334 aa19.77■□□□□ 0.76
USP4-208ENST00000464168 SLC35A5Q9BS91 424 aa19.77■□□□□ 0.76
USP4-208ENST00000464168 MOKQ9UQ07 419 aa19.77■□□□□ 0.76
USP4-208ENST00000464168 AGAP5A6NIR3 686 aa19.76■□□□□ 0.75
USP4-208ENST00000464168 VWC2LB2RUY7 222 aa19.76■□□□□ 0.75
USP4-208ENST00000464168 THBS2P35442 1172 aa19.76■□□□□ 0.75
USP4-208ENST00000464168 CHI3L1P36222 383 aaPredicted RBP19.76■□□□□ 0.75
USP4-208ENST00000464168 SLC1A3P43003 542 aa19.76■□□□□ 0.75
USP4-208ENST00000464168 HPCAP84074 193 aa19.76■□□□□ 0.75
USP4-208ENST00000464168 SYPL1Q16563 259 aa19.76■□□□□ 0.75
USP4-208ENST00000464168 SPANXN4Q5MJ08 99 aa19.76■□□□□ 0.75
USP4-208ENST00000464168 ZNF781Q8N8C0 355 aa19.76■□□□□ 0.75
USP4-208ENST00000464168 TMEM45BQ96B21 275 aa19.76■□□□□ 0.75
USP4-208ENST00000464168 TRNT1Q96Q11 434 aaKnown RBP19.76■□□□□ 0.75
USP4-208ENST00000464168 SLC38A1Q9H2H9 487 aa19.76■□□□□ 0.75
USP4-208ENST00000464168 FAAHO00519 579 aa19.75■□□□□ 0.75
USP4-208ENST00000464168 GZMKP49863 264 aa19.75■□□□□ 0.75
USP4-208ENST00000464168 MAP2K6P52564 334 aa19.75■□□□□ 0.75
USP4-208ENST00000464168 IFFO1Q0D2I5 559 aa19.75■□□□□ 0.75
USP4-208ENST00000464168 RNF130Q86XS8 419 aa19.75■□□□□ 0.75
USP4-208ENST00000464168 TMEM99Q8N816 258 aa19.75■□□□□ 0.75
USP4-208ENST00000464168 FBXO17Q96EF6 278 aa19.75■□□□□ 0.75
USP4-208ENST00000464168 BOD1Q96IK1 185 aa19.75■□□□□ 0.75
USP4-208ENST00000464168 PKNOX2Q96KN3 472 aa19.75■□□□□ 0.75
USP4-208ENST00000464168 ROPN1BQ9BZX4 212 aaPredicted RBP19.75■□□□□ 0.75
USP4-208ENST00000464168 C20orf27Q9GZN8 174 aa19.75■□□□□ 0.75
USP4-208ENST00000464168 ROPN1Q9HAT0 212 aaPredicted RBP19.75■□□□□ 0.75
USP4-208ENST00000464168 SLC35F4A4IF30 521 aa19.74■□□□□ 0.75
USP4-208ENST00000464168 KLF11O14901 512 aa19.74■□□□□ 0.75
USP4-208ENST00000464168 WNT11O96014 354 aa19.74■□□□□ 0.75
USP4-208ENST00000464168 CHRM4P08173 479 aa19.74■□□□□ 0.75
USP4-208ENST00000464168 CDH2P19022 906 aaPredicted RBP19.74■□□□□ 0.75
USP4-208ENST00000464168 IGFBP5P24593 272 aa19.74■□□□□ 0.75
USP4-208ENST00000464168 PDLIM4P50479 330 aa19.74■□□□□ 0.75
USP4-208ENST00000464168 HIKESHIQ53FT3 197 aa19.74■□□□□ 0.75
USP4-208ENST00000464168 OTUD3Q5T2D3 398 aaPredicted RBP19.74■□□□□ 0.75
USP4-208ENST00000464168 OR9K2Q8NGE7 335 aa19.74■□□□□ 0.75
USP4-208ENST00000464168 CCDC115Q96NT0 180 aa19.74■□□□□ 0.75
USP4-208ENST00000464168 ZNF385AQ96PM9 386 aaKnown RBP19.74■□□□□ 0.75
USP4-208ENST00000464168 SORCS2Q96PQ0 1159 aa19.74■□□□□ 0.75
USP4-208ENST00000464168 ADAM19Q9H013 955 aa19.74■□□□□ 0.75
USP4-208ENST00000464168 MTHFD2LQ9H903 347 aaPredicted RBP19.74■□□□□ 0.75
USP4-208ENST00000464168 WDR91A4D1P6 747 aa19.73■□□□□ 0.75
USP4-208ENST00000464168 CFAP73A6NFT4 308 aa19.73■□□□□ 0.75
USP4-208ENST00000464168 AKR7A3O95154 331 aa19.73■□□□□ 0.75
USP4-208ENST00000464168 SERPINE1P05121 402 aa19.73■□□□□ 0.75
USP4-208ENST00000464168 MYZAPP0CAP1 466 aa19.73■□□□□ 0.75
USP4-208ENST00000464168 RPS4Y1P22090 263 aaKnown RBP19.73■□□□□ 0.75
USP4-208ENST00000464168 NR4A2P43354 598 aa19.73■□□□□ 0.75
USP4-208ENST00000464168 ABCE1P61221 599 aaKnown RBP19.73■□□□□ 0.75
USP4-208ENST00000464168 CEACAM7Q14002 265 aa19.73■□□□□ 0.75
USP4-208ENST00000464168 GGTLC2Q14390 218 aa19.73■□□□□ 0.75
USP4-208ENST00000464168 DPY19L1Q2PZI1 675 aa19.73■□□□□ 0.75
USP4-208ENST00000464168 FAM174BQ3ZCQ3 159 aa19.73■□□□□ 0.75
USP4-208ENST00000464168 LRRC74BQ6ZQY2 392 aa19.73■□□□□ 0.75
USP4-208ENST00000464168 AAED1Q7RTV5 226 aa19.73■□□□□ 0.75
USP4-208ENST00000464168 POMGNT2Q8NAT1 580 aa19.73■□□□□ 0.75
USP4-208ENST00000464168 MSI2Q96DH6 328 aaKnown RBP19.73■□□□□ 0.75
USP4-208ENST00000464168 SF3B5Q9BWJ5 86 aaKnown RBP19.73■□□□□ 0.75
USP4-208ENST00000464168 PRR14Q9BWN1 585 aa19.73■□□□□ 0.75
USP4-208ENST00000464168 BTNL2Q9UIR0 455 aa19.73■□□□□ 0.75
USP4-208ENST00000464168 IGHV1-18A0A0C4DH31 117 aa19.72■□□□□ 0.75
USP4-208ENST00000464168 LIPT2A6NK58 231 aa19.72■□□□□ 0.75
USP4-208ENST00000464168 NDUFS8O00217 210 aa19.72■□□□□ 0.75
USP4-208ENST00000464168 SRD5A1P18405 259 aa19.72■□□□□ 0.75
USP4-208ENST00000464168 S100A3P33764 101 aa19.72■□□□□ 0.75
USP4-208ENST00000464168 CLNS1AP54105 237 aaKnown RBP19.72■□□□□ 0.75
USP4-208ENST00000464168 EPS8Q12929 822 aa19.72■□□□□ 0.75
USP4-208ENST00000464168 CHI3L2Q15782 390 aa19.72■□□□□ 0.75
USP4-208ENST00000464168 MRPL2Q5T653 305 aaKnown RBP19.72■□□□□ 0.75
USP4-208ENST00000464168 KLHL24Q6TFL4 600 aa19.72■□□□□ 0.75
USP4-208ENST00000464168 IL17RELQ6ZVW7 336 aa19.72■□□□□ 0.75
USP4-208ENST00000464168 WDR60Q8WVS4 1066 aa19.72■□□□□ 0.75
USP4-208ENST00000464168 AURKBQ96GD4 344 aaPredicted RBP19.72■□□□□ 0.75
USP4-208ENST00000464168 TEX37Q96LM6 180 aa19.72■□□□□ 0.75
USP4-208ENST00000464168 FOXN4Q96NZ1 517 aa19.72■□□□□ 0.75
USP4-208ENST00000464168 EPB41L3Q9Y2J2 1087 aaPredicted RBP19.72■□□□□ 0.75
USP4-208ENST00000464168 RAP2CQ9Y3L5 183 aa19.72■□□□□ 0.75
USP4-208ENST00000464168 FKBP7Q9Y680 259 aa19.72■□□□□ 0.75
USP4-208ENST00000464168 LOC100289279A0A1B0GTE1 492 aa19.71■□□□□ 0.75
USP4-208ENST00000464168 CCDC154A6NI56 674 aa19.71■□□□□ 0.75
USP4-208ENST00000464168 AQP7P3A6NL99 342 aa19.71■□□□□ 0.75
USP4-208ENST00000464168 E9PBE3 544 aa19.71■□□□□ 0.75
USP4-208ENST00000464168 GPIP06744 558 aa19.71■□□□□ 0.75
USP4-208ENST00000464168 IL7RP16871 459 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms