RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 ACTR3BQ9P1U1 418 aa17.72■□□□□ 0.43
COL9A3-204ENST00000463487 KLHL9Q9P2J3 617 aa17.72■□□□□ 0.43
COL9A3-204ENST00000463487 KLF2Q9Y5W3 355 aaPredicted RBP17.72■□□□□ 0.43
COL9A3-204ENST00000463487 GCN1Q92616 2671 aaKnown RBP17.71■□□□□ 0.43
COL9A3-204ENST00000463487 TPST2O60704 377 aa17.71■□□□□ 0.43
COL9A3-204ENST00000463487 AQP8O94778 261 aa17.71■□□□□ 0.43
COL9A3-204ENST00000463487 PRKD3O94806 890 aa17.71■□□□□ 0.43
COL9A3-204ENST00000463487 OR5F1O95221 314 aa17.71■□□□□ 0.43
COL9A3-204ENST00000463487 TNFRSF1BP20333 461 aa17.71■□□□□ 0.43
COL9A3-204ENST00000463487 CBX1P83916 185 aa17.71■□□□□ 0.43
COL9A3-204ENST00000463487 MFSD13AQ14CX5 517 aa17.71■□□□□ 0.43
COL9A3-204ENST00000463487 TTC33Q6PID6 262 aaPredicted RBP17.71■□□□□ 0.43
COL9A3-204ENST00000463487 CNEP1R1Q8N9A8 125 aa17.71■□□□□ 0.43
COL9A3-204ENST00000463487 PIGXQ8TBF5 258 aa17.71■□□□□ 0.43
COL9A3-204ENST00000463487 ROBO4Q8WZ75 1007 aa17.71■□□□□ 0.43
COL9A3-204ENST00000463487 MCUR1Q96AQ8 359 aa17.71■□□□□ 0.43
COL9A3-204ENST00000463487 SLC41A3Q96GZ6 507 aa17.71■□□□□ 0.43
COL9A3-204ENST00000463487 PRRC1Q96M27 445 aa17.71■□□□□ 0.43
COL9A3-204ENST00000463487 WFDC6Q9BQY6 131 aa17.71■□□□□ 0.43
COL9A3-204ENST00000463487 TMEM43Q9BTV4 400 aa17.71■□□□□ 0.43
COL9A3-204ENST00000463487 PRR14Q9BWN1 585 aa17.71■□□□□ 0.43
COL9A3-204ENST00000463487 SLC7A7Q9UM01 511 aa17.71■□□□□ 0.43
COL9A3-204ENST00000463487 FAM32AQ9Y421 112 aaKnown RBP17.71■□□□□ 0.43
COL9A3-204ENST00000463487 DOCK7Q96N67 2140 aa17.71■□□□□ 0.42
COL9A3-204ENST00000463487 TRAV36DV7A0A075B6V5 113 aa17.7■□□□□ 0.42
COL9A3-204ENST00000463487 A0A1W2PNV4 684 aa17.7■□□□□ 0.42
COL9A3-204ENST00000463487 ZC3H12DA2A288 527 aaKnown RBP17.7■□□□□ 0.42
COL9A3-204ENST00000463487 FAM90A27PA6NNH2 459 aa17.7■□□□□ 0.42
COL9A3-204ENST00000463487 DNAJC8O75937 253 aaPredicted RBP17.7■□□□□ 0.42
COL9A3-204ENST00000463487 PDE5AO76074 875 aa17.7■□□□□ 0.42
COL9A3-204ENST00000463487 MSX2P35548 267 aaPredicted RBP17.7■□□□□ 0.42
COL9A3-204ENST00000463487 ST3GAL3Q11203 375 aa17.7■□□□□ 0.42
COL9A3-204ENST00000463487 TRIM25Q14258 630 aaKnown RBP17.7■□□□□ 0.42
COL9A3-204ENST00000463487 OR7A5Q15622 319 aa17.7■□□□□ 0.42
COL9A3-204ENST00000463487 TMEM201Q5SNT2 666 aa17.7■□□□□ 0.42
COL9A3-204ENST00000463487 FAM69AQ5T7M9 428 aa17.7■□□□□ 0.42
COL9A3-204ENST00000463487 PLXDC2Q6UX71 529 aa17.7■□□□□ 0.42
COL9A3-204ENST00000463487 FAM214BQ7L5A3 538 aa17.7■□□□□ 0.42
COL9A3-204ENST00000463487 MAMDC2Q7Z304 686 aaPredicted RBP17.7■□□□□ 0.42
COL9A3-204ENST00000463487 DHFR2Q86XF0 187 aa17.7■□□□□ 0.42
COL9A3-204ENST00000463487 NAXEQ8NCW5 288 aa17.7■□□□□ 0.42
COL9A3-204ENST00000463487 MFSD8Q8NHS3 518 aa17.7■□□□□ 0.42
COL9A3-204ENST00000463487 ASB9Q96DX5 294 aa17.7■□□□□ 0.42
COL9A3-204ENST00000463487 LRGUKQ96M69 825 aa17.7■□□□□ 0.42
COL9A3-204ENST00000463487 EMC3Q9P0I2 261 aa17.7■□□□□ 0.42
COL9A3-204ENST00000463487 C6orf203Q9P0P8 240 aaPredicted RBP17.7■□□□□ 0.42
COL9A3-204ENST00000463487 PCNX1Q96RV3 2341 aa17.69■□□□□ 0.42
COL9A3-204ENST00000463487 LIPT2A6NK58 231 aa17.69■□□□□ 0.42
COL9A3-204ENST00000463487 EEF1E1-BLOC1S5C9J1V9 151 aa17.69■□□□□ 0.42
COL9A3-204ENST00000463487 EEF1E1O43324 174 aaKnown RBP17.69■□□□□ 0.42
COL9A3-204ENST00000463487 CYTIPO60759 359 aa17.69■□□□□ 0.42
COL9A3-204ENST00000463487 SS18L1O75177 396 aaPredicted RBP17.69■□□□□ 0.42
COL9A3-204ENST00000463487 NPIPB7O75200 414 aa17.69■□□□□ 0.42
COL9A3-204ENST00000463487 RNF224P0DH78 156 aa17.69■□□□□ 0.42
COL9A3-204ENST00000463487 ITGA2P17301 1181 aa17.69■□□□□ 0.42
COL9A3-204ENST00000463487 FPR1P21462 350 aa17.69■□□□□ 0.42
COL9A3-204ENST00000463487 AGFG1P52594 562 aaKnown RBP17.69■□□□□ 0.42
COL9A3-204ENST00000463487 PAQR6Q6TCH4 344 aa17.69■□□□□ 0.42
COL9A3-204ENST00000463487 CCDC121Q6ZUS5 278 aa17.69■□□□□ 0.42
COL9A3-204ENST00000463487 CCDC124Q96CT7 223 aaKnown RBP17.69■□□□□ 0.42
COL9A3-204ENST00000463487 SLC7A6OSQ96CW6 309 aaPredicted RBP17.69■□□□□ 0.42
COL9A3-204ENST00000463487 PYURFQ96I23 114 aa17.69■□□□□ 0.42
COL9A3-204ENST00000463487 FNDC11Q9BVV2 318 aa17.69■□□□□ 0.42
COL9A3-204ENST00000463487 SLC19A3Q9BZV2 496 aa17.69■□□□□ 0.42
COL9A3-204ENST00000463487 KLHL4Q9C0H6 718 aa17.69■□□□□ 0.42
COL9A3-204ENST00000463487 CHST11Q9NPF2 352 aa17.69■□□□□ 0.42
COL9A3-204ENST00000463487 RIMS3Q9UJD0 308 aa17.69■□□□□ 0.42
COL9A3-204ENST00000463487 IGHV3-15A0A0B4J1V0 119 aa17.68■□□□□ 0.42
COL9A3-204ENST00000463487 EBAG9O00559 213 aa17.68■□□□□ 0.42
COL9A3-204ENST00000463487 GPR171O14626 319 aa17.68■□□□□ 0.42
COL9A3-204ENST00000463487 SMAD9O15198 467 aaKnown RBP17.68■□□□□ 0.42
COL9A3-204ENST00000463487 RBM34P42696 430 aaKnown RBP17.68■□□□□ 0.42
COL9A3-204ENST00000463487 RPS5P46782 204 aaKnown RBP17.68■□□□□ 0.42
COL9A3-204ENST00000463487 ASCL1P50553 236 aa17.68■□□□□ 0.42
COL9A3-204ENST00000463487 SIRPAP78324 504 aa17.68■□□□□ 0.42
COL9A3-204ENST00000463487 RASGEF1BQ0VAM2 473 aa17.68■□□□□ 0.42
COL9A3-204ENST00000463487 PIN1Q13526 163 aaPredicted RBP17.68■□□□□ 0.42
COL9A3-204ENST00000463487 GDF7Q7Z4P5 450 aa17.68■□□□□ 0.42
COL9A3-204ENST00000463487 OR6K3Q8NGY3 331 aa17.68■□□□□ 0.42
COL9A3-204ENST00000463487 OR6S1Q8NH40 331 aa17.68■□□□□ 0.42
COL9A3-204ENST00000463487 ABHD3Q8WU67 409 aa17.68■□□□□ 0.42
COL9A3-204ENST00000463487 DNAJA3Q96EY1 480 aa17.68■□□□□ 0.42
COL9A3-204ENST00000463487 HS6ST2Q96MM7 605 aa17.68■□□□□ 0.42
COL9A3-204ENST00000463487 AMBRA1Q9C0C7 1298 aa17.68■□□□□ 0.42
COL9A3-204ENST00000463487 FANCFQ9NPI8 374 aa17.68■□□□□ 0.42
COL9A3-204ENST00000463487 KLHL13Q9P2N7 655 aa17.68■□□□□ 0.42
COL9A3-204ENST00000463487 FOXD3Q9UJU5 478 aaPredicted RBP17.68■□□□□ 0.42
COL9A3-204ENST00000463487 A1L4Q6 167 aa17.67■□□□□ 0.42
COL9A3-204ENST00000463487 PRSS44E7EML9 344 aa17.67■□□□□ 0.42
COL9A3-204ENST00000463487 SMNDC1O75940 238 aaKnown RBP eCLIP17.67■□□□□ 0.429e-7■□□□□ 8.2
COL9A3-204ENST00000463487 IMPDH2P12268 514 aa17.67■□□□□ 0.42
COL9A3-204ENST00000463487 TRAP1Q12931 704 aaKnown RBP17.67■□□□□ 0.42
COL9A3-204ENST00000463487 FOXF2Q12947 444 aa17.67■□□□□ 0.42
COL9A3-204ENST00000463487 PDK3Q15120 406 aa17.67■□□□□ 0.42
COL9A3-204ENST00000463487 OTUD3Q5T2D3 398 aaPredicted RBP17.67■□□□□ 0.42
COL9A3-204ENST00000463487 ABLIM2Q6H8Q1 611 aa17.67■□□□□ 0.42
COL9A3-204ENST00000463487 LCN8Q6JVE9 175 aa17.67■□□□□ 0.42
COL9A3-204ENST00000463487 CYP2R1Q6VVX0 501 aa17.67■□□□□ 0.42
COL9A3-204ENST00000463487 STK32CQ86UX6 486 aa17.67■□□□□ 0.42
COL9A3-204ENST00000463487 C10orf53Q8N6V4 93 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms