RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 OR6S1Q8NH40 331 aa14.18□□□□□ -0.14
USP40-206ENST00000443711 MFSD8Q8NHS3 518 aa14.18□□□□□ -0.14
USP40-206ENST00000443711 MIB2Q96AX9 1013 aa14.18□□□□□ -0.14
USP40-206ENST00000443711 ADGRG7Q96K78 797 aa14.18□□□□□ -0.14
USP40-206ENST00000443711 FUZQ9BT04 418 aa14.18□□□□□ -0.14
USP40-206ENST00000443711 TAPBPLQ9BX59 468 aa14.18□□□□□ -0.14
USP40-206ENST00000443711 MEPEQ9NQ76 525 aaPredicted RBP14.18□□□□□ -0.14
USP40-206ENST00000443711 VNN3Q9NY84 501 aa14.18□□□□□ -0.14
USP40-206ENST00000443711 ZNF835Q9Y2P0 537 aa14.18□□□□□ -0.14
USP40-206ENST00000443711 H0YC42 278 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 KPNA4O00629 521 aaPredicted RBP14.17□□□□□ -0.14
USP40-206ENST00000443711 PRRG2O14669 202 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 CXCL13O43927 109 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 E2F6O75461 281 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 CCNB2O95067 398 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 PMS2P2O95744 297 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 IGF2P01344 180 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 HOXD4P09016 255 aaPredicted RBP14.17□□□□□ -0.14
USP40-206ENST00000443711 IMPDH2P12268 514 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 DNAJA1P31689 397 aaKnown RBP14.17□□□□□ -0.14
USP40-206ENST00000443711 EIF1AXP47813 144 aaKnown RBP14.17□□□□□ -0.14
USP40-206ENST00000443711 DIO1P49895 249 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 ARHGDIAP52565 204 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 TPD52P55327 224 aaPredicted RBP14.17□□□□□ -0.14
USP40-206ENST00000443711 OR2B6P58173 313 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 SLC35A1P78382 337 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 PRKCDQ05655 676 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 MFSD13AQ14CX5 517 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 C3AR1Q16581 482 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 SGCBQ16585 318 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 FAM69AQ5T7M9 428 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 PRICKLE2Q7Z3G6 844 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 AMIGO2Q86SJ2 522 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 C10orf53Q8N6V4 93 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 OR4K5Q8NGD3 323 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 OR10D3Q8NH80 312 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 PIGXQ8TBF5 258 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 ZPLD1Q8TCW7 415 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 TAAR8Q969N4 342 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 CENPNQ96H22 339 aaPredicted RBP14.17□□□□□ -0.14
USP40-206ENST00000443711 COQ10BQ9H8M1 238 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 KRCC1Q9NPI7 259 aaPredicted RBP14.17□□□□□ -0.14
USP40-206ENST00000443711 PNPLA3Q9NST1 481 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 ALKBH4Q9NXW9 302 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 U3KQV3 271 aa14.17□□□□□ -0.14
USP40-206ENST00000443711 KIAA1549Q9HCM3 1950 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 LIPT2A6NK58 231 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 ENO4A6NNW6 628 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 DNPH1O43598 174 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 SLC19A2O60779 497 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 WDR1O75083 606 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 C1QL1O75973 258 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 SYNGR4O95473 234 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 BAG2O95816 211 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 CH25HO95992 272 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 IFI30P13284 250 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 GABRA1P14867 456 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 FPR1P21462 350 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 PTGER4P35408 488 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 IFNGR2P38484 337 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 CTBP2P56545 445 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 RAC3P60763 192 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 TLE1Q04724 770 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 C19orf57Q0VDD7 668 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 PPP1R8Q12972 351 aaKnown RBP14.16□□□□□ -0.14
USP40-206ENST00000443711 SEC23BQ15437 767 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 OR7A5Q15622 319 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 MICAQ29983 383 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 HMBOX1Q6NT76 420 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 ZNF585AQ6P3V2 769 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 Q6ZPB1 254 aaPredicted RBP14.16□□□□□ -0.14
USP40-206ENST00000443711 LSRQ86X29 649 aaPredicted RBP14.16□□□□□ -0.14
USP40-206ENST00000443711 NRMQ8IXM6 262 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 PFN4Q8NHR9 129 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 GIPC3Q8TF64 312 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 SLC25A36Q96CQ1 311 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 ZHX1-C8orf76Q96EF9 292 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 SGTBQ96EQ0 304 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 DNAJA3Q96EY1 480 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 NRBF2Q96F24 287 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 PKP2Q99959 881 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 TUBA1CQ9BQE3 449 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 PTDSS2Q9BVG9 487 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 NTN4Q9HB63 628 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 TMEM5Q9Y2B1 443 aa14.16□□□□□ -0.14
USP40-206ENST00000443711 FIGNL2A6NMB9 653 aa14.15□□□□□ -0.14
USP40-206ENST00000443711 PIP5K1CO60331 668 aa14.15□□□□□ -0.14
USP40-206ENST00000443711 OR10H3O60404 316 aa14.15□□□□□ -0.14
USP40-206ENST00000443711 EIF1BO60739 113 aaKnown RBP14.15□□□□□ -0.14
USP40-206ENST00000443711 MT-ATP6P00846 226 aa14.15□□□□□ -0.14
USP40-206ENST00000443711 BGLAPP02818 100 aa14.15□□□□□ -0.14
USP40-206ENST00000443711 GTF2E2P29084 291 aaKnown RBP14.15□□□□□ -0.14
USP40-206ENST00000443711 AGFG1P52594 562 aaKnown RBP14.15□□□□□ -0.14
USP40-206ENST00000443711 IST1P53990 364 aa14.15□□□□□ -0.14
USP40-206ENST00000443711 CASP6P55212 293 aa14.15□□□□□ -0.14
USP40-206ENST00000443711 LSM11P83369 360 aaKnown RBP eCLIP14.15□□□□□ -0.14
USP40-206ENST00000443711 ZNF74Q16587 644 aa14.15□□□□□ -0.14
USP40-206ENST00000443711 EMC4Q5J8M3 183 aa14.15□□□□□ -0.14
USP40-206ENST00000443711 MAMDC2Q7Z304 686 aaPredicted RBP14.15□□□□□ -0.14
USP40-206ENST00000443711 CD163Q86VB7 1156 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms