RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 EVA1AQ9H8M9 152 aa13.48□□□□□ -0.25
LIMS3-201ENST00000437679 ST6GALNAC2Q9UJ37 374 aa13.48□□□□□ -0.25
LIMS3-201ENST00000437679 CAPN7Q9Y6W3 813 aa13.48□□□□□ -0.25
LIMS3-201ENST00000437679 LOC100653049A0A140TA62 436 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 LIPT2A6NK58 231 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 ELOA3DA6NLF2 546 aaPredicted RBP13.47□□□□□ -0.25
LIMS3-201ENST00000437679 ZNF716A6NP11 495 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 DEFB108AA8MXU0 73 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 ZNF814B7Z6K7 855 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 SLC22A2O15244 555 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 TPST1O60507 370 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 GCM2O75603 506 aaPredicted RBP13.47□□□□□ -0.25
LIMS3-201ENST00000437679 KRT34O76011 436 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 MFN2O95140 757 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 DNASE1P24855 282 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 PCBP3P57721 371 aaKnown RBP13.47□□□□□ -0.25
LIMS3-201ENST00000437679 RGS8P57771 180 aaPredicted RBP13.47□□□□□ -0.25
LIMS3-201ENST00000437679 ITGADQ13349 1161 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 ELOA3BQ3SY89 546 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 GLIPR1L2Q4G1C9 344 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 OTUD3Q5T2D3 398 aaPredicted RBP13.47□□□□□ -0.25
LIMS3-201ENST00000437679 SFRP5Q5T4F7 317 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 INTS11Q5TA45 600 aaKnown RBP13.47□□□□□ -0.25
LIMS3-201ENST00000437679 C1orf140Q5VVS0 124 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 NANOGP8Q6NSW7 305 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 Q6ZT83 130 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 LSMEM1Q8N8F7 131 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 PCYOX1LQ8NBM8 494 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 ELOA3Q8NG57 546 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 STK35Q8TDR2 534 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 C10orf82Q8WW14 230 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 DNAJA4Q8WW22 397 aaPredicted RBP13.47□□□□□ -0.25
LIMS3-201ENST00000437679 KISS1RQ969F8 398 aaPredicted RBP13.47□□□□□ -0.25
LIMS3-201ENST00000437679 APH1AQ96BI3 265 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 PIK3IP1Q96FE7 263 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 USB1Q9BQ65 265 aaKnown RBP13.47□□□□□ -0.25
LIMS3-201ENST00000437679 LIME1Q9H400 295 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 NANOGQ9H9S0 305 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 C12orf10Q9HB07 376 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 GID8Q9NWU2 228 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 SELENONQ9NZV5 590 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 TESQ9UGI8 421 aaKnown RBP13.47□□□□□ -0.25
LIMS3-201ENST00000437679 PRSS50Q9UI38 385 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 OTOGQ6ZRI0 2925 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 HRNRQ86YZ3 2850 aaPredicted RBP13.47□□□□□ -0.25
LIMS3-201ENST00000437679 PRR14LQ5THK1 2151 aa13.47□□□□□ -0.25
LIMS3-201ENST00000437679 TMEM229AB2RXF0 380 aa13.46□□□□□ -0.25
LIMS3-201ENST00000437679 M0QX08 132 aa13.46□□□□□ -0.25
LIMS3-201ENST00000437679 RAMP1O60894 148 aa13.46□□□□□ -0.25
LIMS3-201ENST00000437679 MRPL33O75394 65 aaKnown RBP13.46□□□□□ -0.25
LIMS3-201ENST00000437679 AHSA1O95433 338 aa13.46□□□□□ -0.25
LIMS3-201ENST00000437679 CNOT4O95628 575 aaKnown RBP13.46□□□□□ -0.25
LIMS3-201ENST00000437679 THBDP07204 575 aa13.46□□□□□ -0.25
LIMS3-201ENST00000437679 PNMTP11086 282 aa13.46□□□□□ -0.25
LIMS3-201ENST00000437679 PCGF2P35227 344 aa13.46□□□□□ -0.25
LIMS3-201ENST00000437679 IST1P53990 364 aa13.46□□□□□ -0.25
LIMS3-201ENST00000437679 DMTNQ08495 405 aa13.46□□□□□ -0.25
LIMS3-201ENST00000437679 PAMR1Q6UXH9 720 aa13.46□□□□□ -0.25
LIMS3-201ENST00000437679 C22orf34Q6ZV56 151 aa13.46□□□□□ -0.25
LIMS3-201ENST00000437679 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.46□□□□□ -0.25
LIMS3-201ENST00000437679 PATL1Q86TB9 770 aaKnown RBP13.46□□□□□ -0.25
LIMS3-201ENST00000437679 COMTD1Q86VU5 262 aa13.46□□□□□ -0.25
LIMS3-201ENST00000437679 RANBP3LQ86VV4 465 aaPredicted RBP13.46□□□□□ -0.25
LIMS3-201ENST00000437679 WFDC8Q8IUA0 241 aa13.46□□□□□ -0.25
LIMS3-201ENST00000437679 TMEM99Q8N816 258 aa13.46□□□□□ -0.25
LIMS3-201ENST00000437679 SMYD1Q8NB12 490 aa13.46□□□□□ -0.25
LIMS3-201ENST00000437679 OR8J3Q8NGG0 315 aa13.46□□□□□ -0.25
LIMS3-201ENST00000437679 S100PBPQ96BU1 408 aa13.46□□□□□ -0.25
LIMS3-201ENST00000437679 ECSITQ9BQ95 431 aa13.46□□□□□ -0.25
LIMS3-201ENST00000437679 RSPO3Q9BXY4 272 aaPredicted RBP13.46□□□□□ -0.25
LIMS3-201ENST00000437679 PLEKHF2Q9H8W4 249 aa13.46□□□□□ -0.25
LIMS3-201ENST00000437679 TMEM27Q9HBJ8 222 aa13.46□□□□□ -0.25
LIMS3-201ENST00000437679 ADPRHL2Q9NX46 363 aa13.46□□□□□ -0.25
LIMS3-201ENST00000437679 SLC9A8Q9Y2E8 581 aa13.46□□□□□ -0.25
LIMS3-201ENST00000437679 PLEKHA6Q9Y2H5 1048 aa13.46□□□□□ -0.25
LIMS3-201ENST00000437679 ROS1P08922 2347 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 A0A1B0GWA3 101 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 SIAH2O43255 324 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 CCDC22O60826 627 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 NPIPB7O75200 414 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 AKR7A3O95154 331 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 HTR2AP28223 471 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 GTF2E2P29084 291 aaKnown RBP13.45□□□□□ -0.26
LIMS3-201ENST00000437679 ART1P52961 327 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 TSC22D1Q15714 1073 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 VMACQ2NL98 169 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 BEX5Q5H9J7 111 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 ALG10BQ5I7T1 473 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 TMEM225Q6GV28 225 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 ALKBH2Q6NS38 261 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 ULK3Q6PHR2 472 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 C5orf46Q6UWT4 87 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 C6orf89Q6UWU4 347 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 BHLHA15Q7RTS1 189 aaPredicted RBP13.45□□□□□ -0.26
LIMS3-201ENST00000437679 LSRQ86X29 649 aaPredicted RBP13.45□□□□□ -0.26
LIMS3-201ENST00000437679 UBE2J2Q8N2K1 259 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 RNF217Q8TC41 542 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 SLC26A7Q8TE54 656 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 SLC47A1Q96FL8 570 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 SF3B5Q9BWJ5 86 aaKnown RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms