RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 MICBQ29980 383 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 FAM46CQ5VWP2 391 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 TMEM88Q6PEY1 159 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 FRRS1Q6ZNA5 592 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 LDLRAD3Q86YD5 345 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 PUSL1Q8N0Z8 303 aaKnown RBP9.86□□□□□ -0.83
USP54-204ENST00000422491 SYS1Q8N2H4 156 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 SLC25A18Q9H1K4 315 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 OR52A5Q9H2C5 316 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 OR5V1Q9UGF6 321 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 MOKQ9UQ07 419 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 SIGLEC7Q9Y286 467 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 TRBV2A0A0J9YWF9 115 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 RFPL4AA6NLU0 287 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 RFPL4AL1F8VTS6 287 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 EMC8O43402 210 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 OR1F1O43749 312 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 LCMT2O60294 686 aaKnown RBP9.86□□□□□ -0.83
USP54-204ENST00000422491 RAB40ALP0C0E4 278 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 C8orf89P0DMQ9 161 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 TAS2R20P59543 309 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 POU4F2Q12837 409 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 C9orf64Q5T6V5 341 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 ZNF836Q6ZNA1 936 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 NUP43Q8NFH3 380 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 OR13C2Q8NGS9 318 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 RAB40AQ8WXH6 277 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 PHYHIPQ92561 330 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 LINC00615Q96LM1 132 aaPredicted RBP9.86□□□□□ -0.83
USP54-204ENST00000422491 TRMT61BQ9BVS5 477 aaKnown RBP9.86□□□□□ -0.83
USP54-204ENST00000422491 WDR13Q9H1Z4 485 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 C17orf113A0A1B0GUU1 675 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 A0A1W2PR48 441 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 OR6C74A6NCV1 312 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 RIIAD1A6NNX1 92 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 K7ESM1 405 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 POP7O75817 140 aaKnown RBP9.85□□□□□ -0.83
USP54-204ENST00000422491 RCBTB2O95199 551 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 LYPD3O95274 346 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 HTR2AP28223 471 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 FNTBP49356 437 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 CLDN2P57739 230 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 POM121L1PQ3SYA9 428 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 RPL13AP3Q6NVV1 102 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 RPL22L1Q6P5R6 122 aaKnown RBP9.85□□□□□ -0.83
USP54-204ENST00000422491 RNF113BQ8IZP6 322 aaKnown RBP9.85□□□□□ -0.83
USP54-204ENST00000422491 ARL14Q8N4G2 192 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 TMEM239Q8WW34 195 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 NARS2Q96I59 477 aaKnown RBP9.85□□□□□ -0.83
USP54-204ENST00000422491 C10orf90Q96M02 699 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 BIN3Q9NQY0 253 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 CENPVL1A0A0U1RR11 272 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 TRAPPC13A5PLN9 417 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 LRIT2A6NDA9 550 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 ACOD1A6NK06 481 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 C4orf51C9J302 202 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 TMEM127O75204 238 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 ZNF3P17036 446 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 ACTA2P62736 377 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 ACTG2P63267 376 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 ILF3Q12906 894 aaKnown RBP eCLIP9.85□□□□□ -0.83
USP54-204ENST00000422491 IGSF11Q5DX21 431 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 UQCC3Q6UW78 93 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 DCUN1D3Q8IWE4 304 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 ZNF433Q8N7K0 673 aaPredicted RBP9.85□□□□□ -0.83
USP54-204ENST00000422491 OR4D10Q8NGI6 311 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 OR4C16Q8NGL9 310 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 ASB13Q8WXK3 278 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 SLC35A4Q96G79 324 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 CACYBPQ9HB71 228 aaKnown RBP9.85□□□□□ -0.83
USP54-204ENST00000422491 EPHA6Q9UF33 1036 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 CYB5R1Q9UHQ9 305 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 ATG4BQ9Y4P1 393 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 IRAK3Q9Y616 596 aa9.85□□□□□ -0.83
USP54-204ENST00000422491 HEATR5BQ9P2D3 2071 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 A0A1W2PPV9 198 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 DISC1C4P0D8 188 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 CTNSO60931 367 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 PAPLNO95428 1278 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 RLN1P04808 185 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 ADCYAP1P18509 176 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 EDNRAP25101 427 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 NDUFS1P28331 727 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 CTGFP29279 349 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 RFC3P40938 356 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 HAGHLQ6PII5 290 aaPredicted RBP9.84□□□□□ -0.83
USP54-204ENST00000422491 TMPRSS11FQ6ZWK6 438 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 NRSN1Q8IZ57 195 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 TMEM185AQ8NFB2 350 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 OR1M1Q8NGA1 313 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 OR9A2Q8NGT5 310 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 OR6N1Q8NGY5 312 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 OR2L2Q8NH16 312 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 OR4C6Q8NH72 309 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 TNFAIP8L1Q8WVP5 186 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 MIB2Q96AX9 1013 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 DTD2Q96FN9 168 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 LRIG1Q96JA1 1093 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 TSNAXQ99598 290 aaKnown RBP9.84□□□□□ -0.83
USP54-204ENST00000422491 MENTQ9BUN1 341 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms