RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 IDUAP35475 653 aa11.14□□□□□ -0.63
SKA1-203ENST00000417656 MSX2P35548 267 aaPredicted RBP11.14□□□□□ -0.63
SKA1-203ENST00000417656 KIR2DL2P43627 348 aaPredicted RBP11.14□□□□□ -0.63
SKA1-203ENST00000417656 CLK1P49759 484 aaKnown RBP11.14□□□□□ -0.63
SKA1-203ENST00000417656 ASCL1P50553 236 aa11.14□□□□□ -0.63
SKA1-203ENST00000417656 MAP2K6P52564 334 aa11.14□□□□□ -0.63
SKA1-203ENST00000417656 CDH12P55289 794 aa11.14□□□□□ -0.63
SKA1-203ENST00000417656 TFF3Q07654 80 aa11.14□□□□□ -0.63
SKA1-203ENST00000417656 CEACAM7Q14002 265 aa11.14□□□□□ -0.63
SKA1-203ENST00000417656 C1orf140Q5VVS0 124 aa11.14□□□□□ -0.63
SKA1-203ENST00000417656 ABLIM2Q6H8Q1 611 aa11.14□□□□□ -0.63
SKA1-203ENST00000417656 ZNF613Q6PF04 617 aa11.14□□□□□ -0.63
SKA1-203ENST00000417656 ULK3Q6PHR2 472 aa11.14□□□□□ -0.63
SKA1-203ENST00000417656 CBLL1Q75N03 491 aa11.14□□□□□ -0.63
SKA1-203ENST00000417656 VTCN1Q7Z7D3 282 aa11.14□□□□□ -0.63
SKA1-203ENST00000417656 P3H2Q8IVL5 708 aa11.14□□□□□ -0.63
SKA1-203ENST00000417656 MCEMP1Q8IX19 187 aa11.14□□□□□ -0.63
SKA1-203ENST00000417656 ZHX1-C8orf76Q96EF9 292 aa11.14□□□□□ -0.63
SKA1-203ENST00000417656 SLC47A1Q96FL8 570 aa11.14□□□□□ -0.63
SKA1-203ENST00000417656 GMPPAQ96IJ6 420 aaPredicted RBP11.14□□□□□ -0.63
SKA1-203ENST00000417656 HSH2DQ96JZ2 352 aa11.14□□□□□ -0.63
SKA1-203ENST00000417656 PCDHAC1Q9H158 963 aa11.14□□□□□ -0.63
SKA1-203ENST00000417656 C12orf10Q9HB07 376 aa11.14□□□□□ -0.63
SKA1-203ENST00000417656 NPDC1Q9NQX5 325 aaPredicted RBP11.14□□□□□ -0.63
SKA1-203ENST00000417656 SELENONQ9NZV5 590 aa11.14□□□□□ -0.63
SKA1-203ENST00000417656 CD300AQ9UGN4 299 aa11.14□□□□□ -0.63
SKA1-203ENST00000417656 LIPT2A6NK58 231 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 ZNF814B7Z6K7 855 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 DNPH1O43598 174 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 RAMP1O60894 148 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 NPIPB7O75200 414 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 SMNDC1O75940 238 aaKnown RBP eCLIP11.13□□□□□ -0.63
SKA1-203ENST00000417656 PDE5AO76074 875 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 LYPD3O95274 346 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 THY1P04216 161 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 PNMTP11086 282 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 FPR1P21462 350 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 AGTR1P30556 359 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 SELENOWP63302 87 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 SLC35A1P78382 337 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 EGR4Q05215 589 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 RNPS1Q15287 305 aaKnown RBP11.13□□□□□ -0.63
SKA1-203ENST00000417656 OR7A5Q15622 319 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 FXNQ16595 210 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 SWT1Q5T5J6 900 aaKnown RBP11.13□□□□□ -0.63
SKA1-203ENST00000417656 GLYATQ6IB77 296 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 WDR88Q6ZMY6 472 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 BTLAQ7Z6A9 289 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 LUZP2Q86TE4 346 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 STK35Q8TDR2 534 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 ADAMTS16Q8TE57 1224 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 LZICQ8WZA0 190 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 SLC38A4Q969I6 547 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 ZNF300Q96RE9 604 aaPredicted RBP11.13□□□□□ -0.63
SKA1-203ENST00000417656 PSD2Q9BQI7 771 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 PTDSS2Q9BVG9 487 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 POTEKPQ9BYX7 375 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 KLHL13Q9P2N7 655 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 MAGEL2Q9UJ55 1249 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 EMC9Q9Y3B6 208 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 SNX13Q9Y5W8 968 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 V9GYQ6 96 aa11.13□□□□□ -0.63
SKA1-203ENST00000417656 A0A087WUJ7 227 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 TRAPPC13A5PLN9 417 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 ARPC2O15144 300 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 CHP2O43745 196 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 CYTIPO60759 359 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 GPIP06744 558 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 RPS5P46782 204 aaKnown RBP11.12□□□□□ -0.63
SKA1-203ENST00000417656 CTBP2P56545 445 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 TAS2R41P59536 307 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 IFI44LQ53G44 452 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 FAM214BQ7L5A3 538 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 TUSC5Q8IXB3 177 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 SLC43A2Q8N370 569 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 FAM86B1Q8N7N1 296 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 OR6K3Q8NGY3 331 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 GEMIN6Q8WXD5 167 aaKnown RBP11.12□□□□□ -0.63
SKA1-203ENST00000417656 STARD4Q96DR4 205 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 KTI12Q96EK9 354 aaPredicted RBP11.12□□□□□ -0.63
SKA1-203ENST00000417656 TAPBPLQ9BX59 468 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 OPN3Q9H1Y3 402 aaPredicted RBP11.12□□□□□ -0.63
SKA1-203ENST00000417656 PIGMQ9H3S5 423 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 C12orf49Q9H741 205 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 JKAMPQ9P055 326 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 KLHL9Q9P2J3 617 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 RPS6KA6Q9UK32 745 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 ING1Q9UK53 422 aaPredicted RBP11.12□□□□□ -0.63
SKA1-203ENST00000417656 SLC7A7Q9UM01 511 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 PROCRQ9UNN8 238 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 TRAPPC4Q9Y296 219 aa11.12□□□□□ -0.63
SKA1-203ENST00000417656 ASH1LQ9NR48 2969 aaKnown RBP11.12□□□□□ -0.63
SKA1-203ENST00000417656 ZNF716A6NP11 495 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 FTCDNL1E5RQL4 147 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 GMNNO75496 209 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 PRKD3O94806 890 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 AKR7A3O95154 331 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 IFNW1P05000 195 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 ATP6V1B2P21281 511 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 UQCRC1P31930 480 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms