RNA–Protein interactions for RNA: ENST00000414220.2

CHD1-202, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-202ENST00000414220 PSD2Q9BQI7 771 aa13.11□□□□□ -0.31
CHD1-202ENST00000414220 HDHD5Q9BXW7 423 aa13.11□□□□□ -0.31
CHD1-202ENST00000414220 MCCC2Q9HCC0 563 aa13.11□□□□□ -0.31
CHD1-202ENST00000414220 PARPBPQ9NWS1 579 aa13.11□□□□□ -0.31
CHD1-202ENST00000414220 ZNF226Q9NYT6 803 aa13.11□□□□□ -0.31
CHD1-202ENST00000414220 C6orf203Q9P0P8 240 aaPredicted RBP13.11□□□□□ -0.31
CHD1-202ENST00000414220 EDARQ9UNE0 448 aa13.11□□□□□ -0.31
CHD1-202ENST00000414220 HEATR5AQ86XA9 2040 aa13.11□□□□□ -0.31
CHD1-202ENST00000414220 A0A1B0GWA3 101 aa13.1□□□□□ -0.31
CHD1-202ENST00000414220 VAMP5O95183 116 aa13.1□□□□□ -0.31
CHD1-202ENST00000414220 PPP3CBP16298 524 aa13.1□□□□□ -0.31
CHD1-202ENST00000414220 CD247P20963 164 aa13.1□□□□□ -0.31
CHD1-202ENST00000414220 FAM27E3Q08E93 113 aa13.1□□□□□ -0.31
CHD1-202ENST00000414220 MFSD13AQ14CX5 517 aa13.1□□□□□ -0.31
CHD1-202ENST00000414220 OR1Q1Q15612 314 aa13.1□□□□□ -0.31
CHD1-202ENST00000414220 OR7A5Q15622 319 aa13.1□□□□□ -0.31
CHD1-202ENST00000414220 DUSP7Q16829 419 aa13.1□□□□□ -0.31
CHD1-202ENST00000414220 GLIPR1L2Q4G1C9 344 aa13.1□□□□□ -0.31
CHD1-202ENST00000414220 ZNF613Q6PF04 617 aa13.1□□□□□ -0.31
CHD1-202ENST00000414220 ZNF474Q6S9Z5 364 aaPredicted RBP13.1□□□□□ -0.31
CHD1-202ENST00000414220 C6orf89Q6UWU4 347 aa13.1□□□□□ -0.31
CHD1-202ENST00000414220 TMEM200AQ86VY9 491 aa13.1□□□□□ -0.31
CHD1-202ENST00000414220 TREML1Q86YW5 311 aa13.1□□□□□ -0.31
CHD1-202ENST00000414220 ANKS4BQ8N8V4 417 aa13.1□□□□□ -0.31
CHD1-202ENST00000414220 SLC38A4Q969I6 547 aa13.1□□□□□ -0.31
CHD1-202ENST00000414220 CCT8L2Q96SF2 557 aa13.1□□□□□ -0.31
CHD1-202ENST00000414220 USB1Q9BQ65 265 aaKnown RBP13.1□□□□□ -0.31
CHD1-202ENST00000414220 GPATCH1Q9BRR8 931 aaKnown RBP13.1□□□□□ -0.31
CHD1-202ENST00000414220 SF3B5Q9BWJ5 86 aaKnown RBP13.1□□□□□ -0.31
CHD1-202ENST00000414220 KLHL4Q9C0H6 718 aa13.1□□□□□ -0.31
CHD1-202ENST00000414220 ADPRHL2Q9NX46 363 aa13.1□□□□□ -0.31
CHD1-202ENST00000414220 NDE1Q9NXR1 346 aa13.1□□□□□ -0.31
CHD1-202ENST00000414220 CRIM1Q9NZV1 1036 aa13.1□□□□□ -0.31
CHD1-202ENST00000414220 NOSIPQ9Y314 301 aaKnown RBP13.1□□□□□ -0.31
CHD1-202ENST00000414220 SH3D21A4FU49 640 aa13.09□□□□□ -0.31
CHD1-202ENST00000414220 LIPT2A6NK58 231 aa13.09□□□□□ -0.31
CHD1-202ENST00000414220 CCT8L1PA6NM43 557 aa13.09□□□□□ -0.31
CHD1-202ENST00000414220 MRPL33O75394 65 aaKnown RBP13.09□□□□□ -0.31
CHD1-202ENST00000414220 KDELR2P33947 212 aa13.09□□□□□ -0.31
CHD1-202ENST00000414220 UGT2B10P36537 528 aa13.09□□□□□ -0.31
CHD1-202ENST00000414220 SLC7A2P52569 658 aa13.09□□□□□ -0.31
CHD1-202ENST00000414220 LIPEQ05469 1076 aa13.09□□□□□ -0.31
CHD1-202ENST00000414220 BNIP2Q12982 314 aa13.09□□□□□ -0.31
CHD1-202ENST00000414220 SNTB1Q13884 538 aaKnown RBP13.09□□□□□ -0.31
CHD1-202ENST00000414220 DAZAP2Q15038 168 aaPredicted RBP13.09□□□□□ -0.31
CHD1-202ENST00000414220 NRF1Q16656 503 aa13.09□□□□□ -0.31
CHD1-202ENST00000414220 LRRC23Q53EV4 343 aaPredicted RBP13.09□□□□□ -0.31
CHD1-202ENST00000414220 OTUD3Q5T2D3 398 aaPredicted RBP13.09□□□□□ -0.31
CHD1-202ENST00000414220 ABLIM2Q6H8Q1 611 aa13.09□□□□□ -0.31
CHD1-202ENST00000414220 SLC15A3Q8IY34 581 aa13.09□□□□□ -0.31
CHD1-202ENST00000414220 ZNF295-AS1Q8N0V1 137 aa13.09□□□□□ -0.31
CHD1-202ENST00000414220 STEAP2Q8NFT2 490 aa13.09□□□□□ -0.31
CHD1-202ENST00000414220 MFSD8Q8NHS3 518 aa13.09□□□□□ -0.31
CHD1-202ENST00000414220 VANGL1Q8TAA9 524 aaPredicted RBP13.09□□□□□ -0.31
CHD1-202ENST00000414220 LINC01560Q8TB33 94 aa13.09□□□□□ -0.31
CHD1-202ENST00000414220 TAMM41Q96BW9 452 aa13.09□□□□□ -0.31
CHD1-202ENST00000414220 DNAJA3Q96EY1 480 aa13.09□□□□□ -0.31
CHD1-202ENST00000414220 MED18Q9BUE0 208 aa13.09□□□□□ -0.31
CHD1-202ENST00000414220 ALG2Q9H553 416 aa13.09□□□□□ -0.31
CHD1-202ENST00000414220 SPAG4Q9NPE6 437 aa13.09□□□□□ -0.31
CHD1-202ENST00000414220 GPR52Q9Y2T5 361 aa13.09□□□□□ -0.31
CHD1-202ENST00000414220 SH3GLB1Q9Y371 365 aa13.09□□□□□ -0.31
CHD1-202ENST00000414220 KIAA1549Q9HCM3 1950 aa13.09□□□□□ -0.31
CHD1-202ENST00000414220 IGKV3D-15A0A087WSY6 115 aa13.08□□□□□ -0.32
CHD1-202ENST00000414220 A0A087WUJ7 227 aa13.08□□□□□ -0.32
CHD1-202ENST00000414220 A0A0B4J2E0 115 aa13.08□□□□□ -0.32
CHD1-202ENST00000414220 A0A1B0GX12 115 aa13.08□□□□□ -0.32
CHD1-202ENST00000414220 ZC3H12DA2A288 527 aaKnown RBP13.08□□□□□ -0.32
CHD1-202ENST00000414220 TMEM229AB2RXF0 380 aa13.08□□□□□ -0.32
CHD1-202ENST00000414220 M0R3H8 397 aa13.08□□□□□ -0.32
CHD1-202ENST00000414220 GCM2O75603 506 aaPredicted RBP13.08□□□□□ -0.32
CHD1-202ENST00000414220 CNOT4O95628 575 aaKnown RBP13.08□□□□□ -0.32
CHD1-202ENST00000414220 FAM107AO95990 144 aa13.08□□□□□ -0.32
CHD1-202ENST00000414220 IMPDH2P12268 514 aa13.08□□□□□ -0.32
CHD1-202ENST00000414220 HTR2AP28223 471 aa13.08□□□□□ -0.32
CHD1-202ENST00000414220 OR3A2P47893 321 aa13.08□□□□□ -0.32
CHD1-202ENST00000414220 SLC16A1P53985 500 aa13.08□□□□□ -0.32
CHD1-202ENST00000414220 PSME3P61289 254 aa13.08□□□□□ -0.32
CHD1-202ENST00000414220 MXRA7P84157 204 aa13.08□□□□□ -0.32
CHD1-202ENST00000414220 H3F3AP84243 136 aa13.08□□□□□ -0.32
CHD1-202ENST00000414220 P2RY6Q15077 328 aa13.08□□□□□ -0.32
CHD1-202ENST00000414220 NUFIP2Q7Z417 695 aaKnown RBP13.08□□□□□ -0.32
CHD1-202ENST00000414220 CCDC197Q8NCU1 140 aa13.08□□□□□ -0.32
CHD1-202ENST00000414220 APH1AQ96BI3 265 aa13.08□□□□□ -0.32
CHD1-202ENST00000414220 SLC25A36Q96CQ1 311 aa13.08□□□□□ -0.32
CHD1-202ENST00000414220 KCTD14Q9BQ13 255 aaPredicted RBP13.08□□□□□ -0.32
CHD1-202ENST00000414220 POLR2J2Q9GZM3 115 aaKnown RBP13.08□□□□□ -0.32
CHD1-202ENST00000414220 POLR2J3Q9H1A7 115 aaKnown RBP13.08□□□□□ -0.32
CHD1-202ENST00000414220 OR10A4Q9H209 315 aa13.08□□□□□ -0.32
CHD1-202ENST00000414220 CMTM6Q9NX76 183 aa13.08□□□□□ -0.32
CHD1-202ENST00000414220 TAGLN3Q9UI15 199 aa13.08□□□□□ -0.32
CHD1-202ENST00000414220 RASD1Q9Y272 281 aa13.08□□□□□ -0.32
CHD1-202ENST00000414220 UTP20O75691 2785 aaKnown RBP13.08□□□□□ -0.32
CHD1-202ENST00000414220 MED12LQ86YW9 2145 aa13.07□□□□□ -0.32
CHD1-202ENST00000414220 INTS1Q8N201 2190 aaKnown RBP13.07□□□□□ -0.32
CHD1-202ENST00000414220 HCFC1P51610 2035 aa13.07□□□□□ -0.32
CHD1-202ENST00000414220 TRAV36DV7A0A075B6V5 113 aa13.07□□□□□ -0.32
CHD1-202ENST00000414220 TRAPPC13A5PLN9 417 aa13.07□□□□□ -0.32
CHD1-202ENST00000414220 CXCR6O00574 342 aa13.07□□□□□ -0.32
CHD1-202ENST00000414220 AKR7A3O95154 331 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms