RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 EMP3P54852 163 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 ENDOGQ14249 297 aaKnown RBP12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 TMEM183BQ1AE95 376 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 DEFB134Q4QY38 66 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 Q6ZVU0 165 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 SLC29A1Q99808 456 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 BOCQ9BWV1 1114 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 SLC7A7Q9UM01 511 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 IFT172Q9UG01 1749 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 KLRC4O43908 158 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 CSNK1A1P48729 337 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 DAOAP59103 153 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 ABHD17BQ5VST6 288 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 OR8G2PQ6IF36 304 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 APOBEC3HQ6NTF7 200 aaKnown RBP12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 CHRDL1Q9BU40 450 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 ADAMTS6Q9UKP5 1117 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 STYXL1Q9Y6J8 313 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 RAD1O60671 282 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 GDI1P31150 447 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 TBPL1P62380 186 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 MEF2AQ02078 507 aaPredicted RBP12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 TP53I3Q53FA7 332 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 KLHDC7BQ96G42 594 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 ZNF816-ZNF321PA0A0X1KG74 233 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 DBX1A6NMT0 343 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 CACNG3O60359 315 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 SLC46A3Q7Z3Q1 461 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 ZNF321PQ8N8H1 164 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 KCNK6Q9Y257 313 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 CACNA1SQ13698 1873 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 CD63P08962 238 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 ACRV1P26436 265 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 IKZF1Q13422 519 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 HES1Q14469 280 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 BLOC1S3Q6QNY0 202 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 UBIAD1Q9Y5Z9 338 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 H3BQ06 376 aaPredicted RBP12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 WNT10BO00744 389 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 HOXB2P14652 356 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 TUSC1Q2TAM9 212 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 GDF6Q6KF10 455 aaPredicted RBP12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 OTOP2Q7RTS6 562 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 ZMYND19Q96E35 227 aaPredicted RBP12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 ESRP2Q9H6T0 727 aaKnown RBP12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 LRRC30A6NM36 301 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 H3BML4 177 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 AP1G1O43747 822 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 PDGFBP01127 241 aaPredicted RBP12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 KHDC1LQ5JSQ8 128 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 GRINAQ7Z429 371 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 SEMA4GQ9NTN9 838 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 MED9Q9NWA0 146 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 ZNF337Q9Y3M9 751 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 PRRC2BQ5JSZ5 2229 aaKnown RBP12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 SOCS6O14544 535 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 FZD7O75084 574 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 C6orf136Q5SQH8 315 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 LYPD4Q6UWN0 246 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 PARP16Q8N5Y8 322 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 CTDSP1Q9GZU7 261 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 KCNK12Q9HB15 430 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 CXorf49A8MYA2 514 aaPredicted RBP12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 RGS11O94810 467 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 SPI1P17947 270 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 INCA1Q0VD86 236 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 SELPLGQ14242 412 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 RNF212Q495C1 297 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 UNC50Q53HI1 259 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 FAM26DQ5JW98 314 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 H3F3CQ6NXT2 135 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 HMGN2P46Q86SG4 172 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 KREMEN2Q8NCW0 462 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 OR8J2Q8NGG1 315 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 ADAMTS14Q8WXS8 1223 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 ST8SIA2Q92186 375 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 SLC2A6Q9UGQ3 507 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 TRPM6Q9BX84 2022 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 ZNF133P52736 654 aaPredicted RBP12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 EMP2P54851 167 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 WDR4P57081 412 aaKnown RBP12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 FAM24AA6NFZ4 105 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 EPHA5P54756 1037 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 C12orf10Q9HB07 376 aa12.51□□□□□ -0.41
CCDC88A-204ENST00000413716 KLRG2A4D1S0 409 aaPredicted RBP12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 TMEM212A6NML5 194 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 BPIFB3P59826 476 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 TPRG1Q6ZUI0 275 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 OR2G3Q8NGZ4 309 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 RAB3CQ96E17 227 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 CLSTN3Q9BQT9 956 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 PARD6AQ9NPB6 346 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 HHLA2Q9UM44 414 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 SIX6O95475 246 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 DGKZQ13574 1117 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 KCTD3Q9Y597 815 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 M0R3H8 397 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 SULT2B1O00204 365 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 IGHG1P01857 330 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 S100A11P31949 105 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms