RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 DIABLOQ9NR28 239 aa19.3■□□□□ 0.68
CTCF-202ENST00000401394 MAB21L2Q9Y586 359 aa19.3■□□□□ 0.68
CTCF-202ENST00000401394 ICAM2P13598 275 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 CDK5R1Q15078 307 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 GARNL3Q5VVW2 1013 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 TPRA1Q86W33 373 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 ZNF764Q96H86 408 aaPredicted RBP19.29■□□□□ 0.68
CTCF-202ENST00000401394 JAM3Q9BX67 310 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 ANKRD19PQ9H560 264 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 NOX3Q9HBY0 568 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 SDHAF2Q9NX18 166 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 GRXCR1A8MXD5 290 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 SLC31A1O15431 190 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 PRICKLE3O43900 615 aaPredicted RBP19.29■□□□□ 0.68
CTCF-202ENST00000401394 PSMB1P20618 241 aaKnown RBP19.29■□□□□ 0.68
CTCF-202ENST00000401394 SIRPAP78324 504 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 COX18Q8N8Q8 333 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 SUSD6Q92537 303 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 RASD2Q96D21 266 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 REG4Q9BYZ8 158 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 POMT2Q9UKY4 750 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 MED31Q9Y3C7 131 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 H3BUI4 141 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 FGF17O60258 216 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 CTSBP07858 339 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 TMEM44Q2T9K0 475 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 CFAP77Q6ZQR2 320 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 SLC51BQ86UW2 128 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 ZNF511Q8NB15 262 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 OR6M1Q8NGM8 313 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 RGP1Q92546 391 aaPredicted RBP19.29■□□□□ 0.68
CTCF-202ENST00000401394 CAMK2AQ9UQM7 478 aa19.29■□□□□ 0.68
CTCF-202ENST00000401394 SRMP19623 302 aa19.28■□□□□ 0.68
CTCF-202ENST00000401394 CSRP2Q16527 193 aa19.28■□□□□ 0.68
CTCF-202ENST00000401394 ARHGAP11BQ3KRB8 267 aa19.28■□□□□ 0.68
CTCF-202ENST00000401394 HSD17B12Q53GQ0 312 aa19.28■□□□□ 0.68
CTCF-202ENST00000401394 ATRAIDQ6UW56 229 aa19.28■□□□□ 0.68
CTCF-202ENST00000401394 GJD3Q8N144 294 aa19.28■□□□□ 0.68
CTCF-202ENST00000401394 BOLLQ8N9W6 283 aaKnown RBP19.28■□□□□ 0.68
CTCF-202ENST00000401394 STK35Q8TDR2 534 aa19.28■□□□□ 0.68
CTCF-202ENST00000401394 TRANK1O15050 2925 aa19.28■□□□□ 0.68
CTCF-202ENST00000401394 TEX51A0A1B0GUA7 166 aa19.28■□□□□ 0.68
CTCF-202ENST00000401394 A0A1B0GWA3 101 aa19.28■□□□□ 0.68
CTCF-202ENST00000401394 RAD1O60671 282 aa19.28■□□□□ 0.68
CTCF-202ENST00000401394 PTP4A3O75365 173 aa19.28■□□□□ 0.68
CTCF-202ENST00000401394 AMZ1Q400G9 498 aa19.28■□□□□ 0.68
CTCF-202ENST00000401394 GPAT4Q86UL3 456 aa19.28■□□□□ 0.68
CTCF-202ENST00000401394 OR2L8Q8NGY9 312 aa19.28■□□□□ 0.68
CTCF-202ENST00000401394 SMIM19Q96E16 107 aa19.28■□□□□ 0.68
CTCF-202ENST00000401394 CALML5Q9NZT1 146 aa19.28■□□□□ 0.68
CTCF-202ENST00000401394 ING1Q9UK53 422 aaPredicted RBP19.28■□□□□ 0.68
CTCF-202ENST00000401394 FBXL2Q9UKC9 423 aa19.28■□□□□ 0.68
CTCF-202ENST00000401394 H0Y8X5 98 aa19.27■□□□□ 0.68
CTCF-202ENST00000401394 HRKO00198 91 aa19.27■□□□□ 0.68
CTCF-202ENST00000401394 GPANK1O95872 356 aa19.27■□□□□ 0.68
CTCF-202ENST00000401394 CEACAM5P06731 702 aa19.27■□□□□ 0.68
CTCF-202ENST00000401394 ZNF3P17036 446 aa19.27■□□□□ 0.68
CTCF-202ENST00000401394 GALP22466 123 aa19.27■□□□□ 0.68
CTCF-202ENST00000401394 AGBL4Q5VU57 503 aa19.27■□□□□ 0.68
CTCF-202ENST00000401394 FBXO42Q6P3S6 717 aa19.27■□□□□ 0.68
CTCF-202ENST00000401394 MRPL43Q8N983 215 aaKnown RBP19.27■□□□□ 0.68
CTCF-202ENST00000401394 OR4K14Q8NGD5 310 aa19.27■□□□□ 0.68
CTCF-202ENST00000401394 OR10G6Q8NH81 332 aa19.27■□□□□ 0.68
CTCF-202ENST00000401394 SYNPRQ8TBG9 265 aa19.27■□□□□ 0.68
CTCF-202ENST00000401394 TBC1D29Q9UFV1 150 aa19.27■□□□□ 0.68
CTCF-202ENST00000401394 MOKQ9UQ07 419 aa19.27■□□□□ 0.68
CTCF-202ENST00000401394 HEATR5AQ86XA9 2040 aa19.27■□□□□ 0.68
CTCF-202ENST00000401394 GMFGO60234 142 aa19.27■□□□□ 0.68
CTCF-202ENST00000401394 ZFPL1O95159 310 aa19.27■□□□□ 0.68
CTCF-202ENST00000401394 TAGLNQ01995 201 aaKnown RBP19.27■□□□□ 0.68
CTCF-202ENST00000401394 DUSP8Q13202 625 aa19.27■□□□□ 0.68
CTCF-202ENST00000401394 DCAF12L2Q5VW00 463 aa19.27■□□□□ 0.68
CTCF-202ENST00000401394 PSRC1Q6PGN9 363 aaPredicted RBP19.27■□□□□ 0.68
CTCF-202ENST00000401394 GPALPP1Q8IXQ4 340 aa19.27■□□□□ 0.68
CTCF-202ENST00000401394 RELL2Q8NC24 303 aaPredicted RBP19.27■□□□□ 0.68
CTCF-202ENST00000401394 OR10AC1Q8NH08 325 aa19.27■□□□□ 0.68
CTCF-202ENST00000401394 ULBP3Q9BZM4 244 aa19.27■□□□□ 0.68
CTCF-202ENST00000401394 NPFFR2Q9Y5X5 522 aa19.27■□□□□ 0.68
CTCF-202ENST00000401394 ARID1AO14497 2285 aa19.27■□□□□ 0.67
CTCF-202ENST00000401394 L7N2F9 121 aa19.26■□□□□ 0.67
CTCF-202ENST00000401394 KHNYNO15037 678 aaKnown RBP19.26■□□□□ 0.67
CTCF-202ENST00000401394 IGF2P01344 180 aa19.26■□□□□ 0.67
CTCF-202ENST00000401394 ATP1B1P05026 303 aa19.26■□□□□ 0.67
CTCF-202ENST00000401394 FBXO45P0C2W1 286 aa19.26■□□□□ 0.67
CTCF-202ENST00000401394 CDK2P24941 298 aa19.26■□□□□ 0.67
CTCF-202ENST00000401394 PTH2RP49190 550 aa19.26■□□□□ 0.67
CTCF-202ENST00000401394 H2BFSP57053 126 aa19.26■□□□□ 0.67
CTCF-202ENST00000401394 PSMA6P60900 246 aaKnown RBP19.26■□□□□ 0.67
CTCF-202ENST00000401394 GUCA2AQ02747 115 aa19.26■□□□□ 0.67
CTCF-202ENST00000401394 C3P1Q6ZMU1 363 aa19.26■□□□□ 0.67
CTCF-202ENST00000401394 OR2L13Q8N349 312 aa19.26■□□□□ 0.67
CTCF-202ENST00000401394 HDDC3Q8N4P3 179 aa19.26■□□□□ 0.67
CTCF-202ENST00000401394 FRMD1Q8N878 549 aa19.26■□□□□ 0.67
CTCF-202ENST00000401394 FBXW5Q969U6 566 aa19.26■□□□□ 0.67
CTCF-202ENST00000401394 FOXN4Q96NZ1 517 aa19.26■□□□□ 0.67
CTCF-202ENST00000401394 MRPL39Q9NYK5 338 aaKnown RBP19.26■□□□□ 0.67
CTCF-202ENST00000401394 MPDZO75970 2070 aa19.26■□□□□ 0.67
CTCF-202ENST00000401394 A0A1B0GVI7 797 aa19.26■□□□□ 0.67
CTCF-202ENST00000401394 ABHD14A-ACY1A0A1B0GW23 586 aa19.26■□□□□ 0.67
CTCF-202ENST00000401394 PCP4L1A6NKN8 68 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms