RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 TMEM217Q8N7C4 229 aa12.6□□□□□ -0.39
USP49-203ENST00000394253 PHF3Q92576 2039 aaKnown RBP12.6□□□□□ -0.39
USP49-203ENST00000394253 EP300Q09472 2414 aaPredicted RBP12.6□□□□□ -0.39
USP49-203ENST00000394253 ADAMTS4O75173 837 aa12.6□□□□□ -0.39
USP49-203ENST00000394253 ADH5P11766 374 aa12.6□□□□□ -0.39
USP49-203ENST00000394253 HSD17B1P14061 328 aa12.6□□□□□ -0.39
USP49-203ENST00000394253 MLLT11Q13015 90 aaPredicted RBP12.6□□□□□ -0.39
USP49-203ENST00000394253 SUCNR1Q9BXA5 334 aa12.6□□□□□ -0.39
USP49-203ENST00000394253 GNB4Q9HAV0 340 aa12.6□□□□□ -0.39
USP49-203ENST00000394253 SCAMP2O15127 329 aaKnown RBP12.6□□□□□ -0.39
USP49-203ENST00000394253 TIMP2P16035 220 aa12.6□□□□□ -0.39
USP49-203ENST00000394253 PCGF2P35227 344 aa12.6□□□□□ -0.39
USP49-203ENST00000394253 BCL6P41182 706 aa12.6□□□□□ -0.39
USP49-203ENST00000394253 HERPUD2Q9BSE4 406 aa12.6□□□□□ -0.39
USP49-203ENST00000394253 C20orf24Q9BUV8 137 aa12.6□□□□□ -0.39
USP49-203ENST00000394253 C20orf85Q9H1P6 137 aa12.6□□□□□ -0.39
USP49-203ENST00000394253 A8MU76 341 aa12.6□□□□□ -0.39
USP49-203ENST00000394253 TRIM77I1YAP6 450 aa12.6□□□□□ -0.39
USP49-203ENST00000394253 FOXD2O60548 495 aaPredicted RBP12.6□□□□□ -0.39
USP49-203ENST00000394253 SIX6O95475 246 aa12.6□□□□□ -0.39
USP49-203ENST00000394253 GCSHP23434 173 aa12.6□□□□□ -0.39
USP49-203ENST00000394253 HSD17B11Q8NBQ5 300 aa12.6□□□□□ -0.39
USP49-203ENST00000394253 UBQLN4Q9NRR5 601 aa12.6□□□□□ -0.39
USP49-203ENST00000394253 KLRC4O43908 158 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 CDC123O75794 336 aaPredicted RBP12.59□□□□□ -0.39
USP49-203ENST00000394253 WASP42768 502 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 LILRA4P59901 499 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 OR2B8PP59922 312 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 SYT6Q5T7P8 510 aaPredicted RBP12.59□□□□□ -0.39
USP49-203ENST00000394253 ZNF776Q68DI1 518 aaPredicted RBP12.59□□□□□ -0.39
USP49-203ENST00000394253 OR4F5Q8NH21 305 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 GPR119Q8TDV5 335 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 DUSP19Q8WTR2 217 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 OR4F4Q96R69 305 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 NDRG3Q9UGV2 375 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 CACNA1EQ15878 2313 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 PSMB1P20618 241 aaKnown RBP12.59□□□□□ -0.39
USP49-203ENST00000394253 MDGA2Q7Z553 956 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 ILDR1Q86SU0 546 aaPredicted RBP12.59□□□□□ -0.39
USP49-203ENST00000394253 ZDHHC7Q9NXF8 308 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 KLK4Q9Y5K2 254 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 RGS11O94810 467 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 CSKP41240 450 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 C4orf36Q96KX1 117 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 MAF1Q9H063 256 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 NMNAT1Q9HAN9 279 aaPredicted RBP12.59□□□□□ -0.39
USP49-203ENST00000394253 MCRIP1C9JLW8 97 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 RD3LP0DJH9 198 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 SFTPDP35247 375 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 SLC35G3Q8N808 338 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 OR2G3Q8NGZ4 309 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 SAMD8Q96LT4 415 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 NUDT22Q9BRQ3 303 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 SLC25A32Q9H2D1 315 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 CFAP20Q9Y6A4 193 aaKnown RBP12.59□□□□□ -0.39
USP49-203ENST00000394253 CD79AP11912 226 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 GLIS3Q8NEA6 775 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 KCNK13Q9HB14 408 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 SH3BGRL2Q9UJC5 107 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 ZNF337Q9Y3M9 751 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 KDM6BO15054 1643 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 LYPD4Q6UWN0 246 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 MFSD9Q8NBP5 474 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 ENKD1Q9H0I2 346 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 ZNF536O15090 1300 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 M0R2Z0 102 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 ORM1P02763 201 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 PSMB2P49721 201 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.59□□□□□ -0.39
USP49-203ENST00000394253 ZNF547Q8IVP9 402 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 ASB11Q8WXH4 323 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 SLC39A13Q96H72 371 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 MVB12BQ9H7P6 319 aa12.59□□□□□ -0.39
USP49-203ENST00000394253 DBX1A6NMT0 343 aa12.58□□□□□ -0.39
USP49-203ENST00000394253 ANHXE9PGG2 379 aa12.58□□□□□ -0.39
USP49-203ENST00000394253 ARRB1P49407 418 aaPredicted RBP12.58□□□□□ -0.39
USP49-203ENST00000394253 EMP2P54851 167 aa12.58□□□□□ -0.39
USP49-203ENST00000394253 P2RY14Q15391 338 aa12.58□□□□□ -0.39
USP49-203ENST00000394253 MOGAT2Q3SYC2 334 aa12.58□□□□□ -0.39
USP49-203ENST00000394253 ZNF322Q6U7Q0 402 aaPredicted RBP12.58□□□□□ -0.39
USP49-203ENST00000394253 STT3BQ8TCJ2 826 aa12.58□□□□□ -0.39
USP49-203ENST00000394253 FBRSL1Q9HCM7 1045 aaKnown RBP12.58□□□□□ -0.39
USP49-203ENST00000394253 OLAHQ9NV23 265 aa12.58□□□□□ -0.39
USP49-203ENST00000394253 GMPR2Q9P2T1 348 aaKnown RBP12.58□□□□□ -0.39
USP49-203ENST00000394253 PGAP2Q9UHJ9 254 aa12.58□□□□□ -0.39
USP49-203ENST00000394253 ZNF28P17035 718 aa12.58□□□□□ -0.4
USP49-203ENST00000394253 SEC61A1P61619 476 aaKnown RBP12.58□□□□□ -0.4
USP49-203ENST00000394253 C18orf63Q68DL7 685 aa12.58□□□□□ -0.4
USP49-203ENST00000394253 RAB6CQ9H0N0 254 aa12.58□□□□□ -0.4
USP49-203ENST00000394253 SLC35A3Q9Y2D2 325 aa12.58□□□□□ -0.4
USP49-203ENST00000394253 SLC22A20A6NK97 555 aa12.58□□□□□ -0.4
USP49-203ENST00000394253 C4BPAP04003 597 aaKnown RBP12.58□□□□□ -0.4
USP49-203ENST00000394253 BPIFB3P59826 476 aa12.58□□□□□ -0.4
USP49-203ENST00000394253 GTDC1Q4AE62 458 aa12.58□□□□□ -0.4
USP49-203ENST00000394253 EGLN3Q9H6Z9 239 aa12.58□□□□□ -0.4
USP49-203ENST00000394253 ERVMER34-1Q9H9K5 563 aa12.58□□□□□ -0.4
USP49-203ENST00000394253 ATXN7L1Q9ULK2 861 aaPredicted RBP12.58□□□□□ -0.4
USP49-203ENST00000394253 SCN4AP35499 1836 aa12.58□□□□□ -0.4
USP49-203ENST00000394253 KIF13BQ9NQT8 1826 aa12.58□□□□□ -0.4
USP49-203ENST00000394253 PPP1R3DO95685 299 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms