RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 CA14Q9ULX7 337 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 PRELID1Q9Y255 219 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 A8MUA0 341 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 MAGEB1P43366 347 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 CFHR1Q03591 330 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 LTBQ06643 244 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 TBRG1Q3YBR2 411 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 PAMR1Q6UXH9 720 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 TSTD1Q8NFU3 115 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 OR4D9Q8NGE8 314 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 OR5H6Q8NGV6 325 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 UPRTQ96BW1 309 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 SGTBQ96EQ0 304 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 FYTTD1Q96QD9 318 aaKnown RBP12.24□□□□□ -0.45
CCDC3-202ENST00000378839 SLC38A3Q99624 504 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 TTYH1Q9H313 450 aaPredicted RBP12.24□□□□□ -0.45
CCDC3-202ENST00000378839 INPP5EQ9NRR6 644 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 OR10H1Q9Y4A9 318 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 CACNA1IQ9P0X4 2223 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 C17orf105B2RV13 164 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 PSMD9O00233 223 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 NDUFB2O95178 105 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 MLLT3P42568 568 aaPredicted RBP12.23□□□□□ -0.45
CCDC3-202ENST00000378839 FOXL2P58012 376 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 EGR4Q05215 589 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 RIN1Q13671 783 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 ACSM3Q53FZ2 586 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 CEP78Q5JTW2 689 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 HBMQ6B0K9 141 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 SFXN4Q6P4A7 337 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 ARHGAP11AQ6P4F7 1023 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 ZNF550Q7Z398 422 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 FAM71CQ8NEG0 241 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 OR6C4Q8NGE1 309 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 RNF121Q9H920 327 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 ENAMQ9NRM1 1142 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 EXTL2Q9UBQ6 330 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 ZNF749O43361 778 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 MYL9P24844 172 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 DDOSTP39656 456 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 SLC37A1P57057 533 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 RPS4XP62701 263 aaKnown RBP12.23□□□□□ -0.45
CCDC3-202ENST00000378839 LCN1P1Q5VSP4 162 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 LYPD8Q6UX82 237 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 PRR22Q8IZ63 422 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 LILRB4Q8NHJ6 448 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 DNAJA3Q96EY1 480 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 TSSK2Q96PF2 358 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 G6PC3Q9BUM1 346 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 NXF5Q9H1B4 397 aaKnown RBP12.23□□□□□ -0.45
CCDC3-202ENST00000378839 RANGRFQ9HD47 186 aaPredicted RBP12.23□□□□□ -0.45
CCDC3-202ENST00000378839 NRIP3Q9NQ35 241 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 SOHLH2Q9NX45 425 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 ZNF221Q9UK13 617 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 PLCL2Q9UPR0 1127 aa12.23□□□□□ -0.45
CCDC3-202ENST00000378839 TMEM265A0A087WTH1 108 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 CLDN4O14493 209 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 GMFGO60234 142 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 IGFBP4P22692 258 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 CD38P28907 300 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 PSMB10P40306 273 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 CDKN2AP42771 156 aaKnown RBP12.22□□□□□ -0.45
CCDC3-202ENST00000378839 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.22□□□□□ -0.45
CCDC3-202ENST00000378839 RNF170Q96K19 258 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 ABHD1Q96SE0 405 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 NMNAT2Q9BZQ4 307 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 CYSLTR2Q9NS75 346 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 ACOXLQ9NUZ1 547 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 NLKQ9UBE8 527 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 BAIAP2Q9UQB8 552 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 ABCA7Q8IZY2 2146 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 FITM1A5D6W6 292 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 EFCAB7A8K855 629 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 METTL12A8MUP2 240 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 FAM25AB3EWG3 89 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 FAM25CB3EWG5 89 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 FAM25GB3EWG6 89 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 GRPRP30550 384 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 MAP2K3P46734 347 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 HSD17B7P56937 341 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 SKP2Q13309 424 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 GGTLC2Q14390 218 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 UBL7Q96S82 380 aaPredicted RBP12.22□□□□□ -0.45
CCDC3-202ENST00000378839 ARPC5LQ9BPX5 153 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 NRSN2Q9GZP1 204 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 KCNN2Q9H2S1 579 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 PNO1Q9NRX1 252 aaKnown RBP12.22□□□□□ -0.45
CCDC3-202ENST00000378839 ANKRD10Q9NXR5 420 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 DHCR7Q9UBM7 475 aaKnown RBP12.22□□□□□ -0.45
CCDC3-202ENST00000378839 RPS6KB2Q9UBS0 482 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 COLQQ9Y215 455 aaPredicted RBP12.22□□□□□ -0.45
CCDC3-202ENST00000378839 MRPS33Q9Y291 106 aaKnown RBP12.22□□□□□ -0.45
CCDC3-202ENST00000378839 PCDHGB7Q9Y5F8 929 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 MPDZO75970 2070 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 HMX3A6NHT5 357 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 MBTPS2O43462 519 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 OR7A10O76100 309 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 PSKH1P11801 424 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 SPI1P17947 270 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 SDHBP21912 280 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms